Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 147 3e-30 seq4 89.7 7e-13 >seq5 Length=13709650 Score = 147 bits (162), Expect = 3e-30 Identities = 400/600 (67%), Gaps = 17/600 (3%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||||| || ||||||| | || |||||||| || || || | Sbjct 2138187 CACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC 2138246 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| || || || || |||||||| || ||||| ||| | | | || || ||||| Sbjct 2138247 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTTCCGGAGAAGAA 2138305 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT 32837 || ||||| || || || |||| | || || || | | ||| || || Sbjct 2138306 GATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAA----GGTCTGAGATCCGT 2138361 Query 32838 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| || ||||| | || ||||| || ||||| || ||||| || || Sbjct 2138362 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGC 2138421 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 ||||||| || | | || || ||||||| | || ||||| | | ||||||||||| Sbjct 2138422 GGAAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACA 2138481 Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTA 33014 | || |||||||| || ||||| || || || || |||||| ||||| | ||||| | Sbjct 2138482 TCTCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAG 2138540 Query 33015 ATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | || || || | ||| || || || | ||| || || |||||||| || Sbjct 2138541 ACTTGGACATC-GGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGC 2138599 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGT-TTATT 33130 || || || || | || ||||| || || | |||| | | || | | || | Sbjct 2138600 AGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTC 2138659 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 |||||| | | |||| || | ||| |||||||| | ||||| || ||||| || || Sbjct 2138660 CCAATCGCGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGC 2138719 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 || || ||||| | |||||| | | || || ||||| || ||| ||||| | ||| Sbjct 2138720 TTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 2138779 >seq4 Length=14994381 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 294909 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 294850 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 || ||||| ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 294849 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 294790 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 294789 AACACCAATACCGCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 294730 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 294729 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 294688 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| || || || | |||||||| || |||||||||||| | | ||| | | || | Sbjct 294563 GTTCCAGCGTTGAAAAGAGTAGGAGACGCATGAGTAAACCATCTCTGAGACATCAAATGG 294504 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || |||| || || || || ||||| | ||| ||||| || || || || | ||| | Sbjct 294503 TATGTCTGGATTGCGGAATCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 294445 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| ||||| || ||||| | || | | ||| || | ||| ||| | || | Sbjct 294444 CATGTGTTGAGGCCTCTCAACAACTTTCCCTTGGACTTTTAAGAGGTATGATCTCTCAAG 294385 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||||||| || || | | ||| ||| || || || || || || Sbjct 294384 AGTTTTAAATCCGAAGAAATCATATTCAAAATCACGATCATAGATTAT 294337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625877530800