Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 210 2e-49 seq6 96.9 4e-15 seq1 89.7 6e-13 seq7 87.8 2e-12 seq8 82.4 9e-11 seq4 82.4 9e-11 >seq5 Length=13709650 Score = 210 bits (232), Expect = 2e-49 Identities = 410/595 (69%), Gaps = 12/595 (2%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| || | |||||| |||||| ||||| ||||||||||| || ||||| || || Sbjct 2138176 TGTAGATAAGGCACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTG 2138235 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTA 93199 ||| ||||| || || | |||||||||||||| ||||| || | || |||| || || Sbjct 2138236 AGAAAGTTAACCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGA-TGGAGCAGAAGCTT 2138294 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || || || |||||||| || || || || || || ||||| ||||| | | Sbjct 2138295 CCGGAGAAGAAGATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAAGGT--CT 2138352 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | | | ||||||||| | ||||| | ||||| ||| | ||||| | || Sbjct 2138353 GAGAT-CCGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTC 2138411 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 || || ||| || || | |||| ||| | |||| ||||| ||||||| | Sbjct 2138412 TCAATCGCGCGGAAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGA 2138471 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| |||||| |||||||| | |||||| || || || ||||| ||||||||| | Sbjct 2138472 AGACTATACATCTCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGC 2138531 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || |||| || || || || || | || | ||||||| || || || || Sbjct 2138532 GCCTCCGAGACTTGGACATC-GGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCC 2138590 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 |||||||| || || ||||| | | || || || || || || | || || || Sbjct 2138591 GTCGGATGCAGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAG 2138650 Query 93559 ---CTTATCCCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 || ||||||||| | | | |||| ||| ||||| |||||||| | ||||| || | Sbjct 2138651 ACTGTTCTCCCAATCGCGGTTG-TCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGG 2138709 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||||| ||||| |||||||| ||||| || | | | || || ||||| || || Sbjct 2138710 ATGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACAT 2138764 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| ||||| |||||| | || || | || Sbjct 7255822 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGC 7255763 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| |||||||| ||||| | ||||| || Sbjct 7255762 GTGGGTTCAAACCCCACTTCTGAC-ATTTATTCTT 7255729 >seq6 Length=16577294 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| ||||| |||||| | || || | || Sbjct 13595681 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGC 13595622 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| |||||||| |||||| Sbjct 13595621 GTGGGTTCAAACCCCACTTCTGACA 13595597 Score = 93.3 bits (102), Expect = 5e-14 Identities = 79/96 (82%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||||||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 2406951 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 2407008 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || |||||| |||||| ||| || || Sbjct 2407009 CGTGGGTTCAAATCCCACATCTGACATATTTTTTTT 2407044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/109 (79%), Gaps = 10/109 (9%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 8894129 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 8894186 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||| ||| ||||| ||||||| Sbjct 8894187 GCGTGGGTTCAAATCCCACTTCTGACATTTCATTTTTATT-CAATTTTT 8894234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 13603858 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGG 13603801 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| |||||||| |||||| Sbjct 13603800 CGTGGGTTCAAACCCCACTTCTGACA 13603775 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1840002 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1839945 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 1839944 GGGTTCAAATCCCACAGCTGTCAA 1839921 >seq1 Length=19566579 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 10804864 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGG 10804921 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||| |||||||| ||||||||| Sbjct 10804922 CGTGGGTTCAAACCCCACTTCTGACAAAT 10804950 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3973666 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3973723 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 3973724 GGGTTCAAATCCCACAGCTGTCAA 3973747 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 6981361 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 6981302 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTA 126352 ||||||| || ||||| ||||||| ||| Sbjct 6981301 TGGGTTCAAATCCCACTTCTGACAATTTA 6981273 >seq7 Length=17303919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 6540907 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 6540850 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 6540849 GCGTGGGTTCAAATCCCACTTCTGACAA 6540822 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 15434727 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 15434670 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 15434669 GCGTGGGTTCAAACCCCACTTCTGACA 15434643 >seq8 Length=13324298 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/90 (81%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 7320343 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGG 7320286 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| ||||||| || Sbjct 7320285 CGTGGGTTCAAATCCCACTTCTGACAATTT 7320256 >seq4 Length=14994381 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 9634101 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 9634158 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 9634159 GCGTGGGTTCAAATCCCACTTCTGACA 9634185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855419332520