Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 143 2e-29 seq7 131 1e-25 seq2 113 4e-20 seq1 109 5e-19 seq5 93.3 4e-14 seq4 82.4 6e-11 >seq6 Length=16577294 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || |||||||| |||| || || || || | | | Sbjct 6990652 ATGCAGATCTTTGTGAAGACTCTCACTGGTAAAACAATCACCCTAGAGGTTGAGAGCTCA 6990593 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || ||||| || || ||||| || ||||| || ||||| ||||| Sbjct 6990592 GATACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGATCAG 6990533 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| |||||||| || ||| |||||||| |||||| | | ||||||||| Sbjct 6990532 CAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGTCGCACCTTGGCTGATTACAAC 6990473 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || ||||| |||||| | ||||| || Sbjct 6990472 ATCCAGAAAGAGTCCACCCTCCATTTGGT 6990444 Score = 140 bits (154), Expect = 3e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||||||||| || ||||| | || ||||| || |||||||||| || || | | Sbjct 6991110 AGATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCT 6991051 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || | || ||| || || |||||||| || ||||| || || | Sbjct 6991050 CTGACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACC 6990991 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | | || || ||||| |||||| | || ||| ||||||| | ||||||||| Sbjct 6990990 AGCAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACA 6990931 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 |||| || ||||| |||||| | ||||| ||| | || || Sbjct 6990930 ACATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTT 6990891 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || |||||||| ||| | ||||| || || |||| || || ||||||| Sbjct 2563753 TACAGATGCAGATCTTTGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTGGAAA 2563694 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | || || | ||| | | || || || || |||||||| ||||| || || | Sbjct 2563693 GCTCTGACACAATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGG 2563634 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||| ||| | ||||| |||||||| || ||| | || ||| ||| ||| | | || | Sbjct 2563633 ATCAGCAAAGGCTTATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGACT 2563574 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||||| || ||||||||| | || || || Sbjct 2563573 ACAACATTCAGAAGGAATCCACCCTCCACTTGGT 2563540 Score = 122 bits (134), Expect = 7e-23 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 ||||| |||||||||||||||| ||||| |||| || || || ||||||| || || Sbjct 735800 TTTGTCCAGATGCAAATTTTTGTGAAAACACTAACTGGCAAGACCATCACTCTCGAGGTC 735741 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 || | | | || ||| | ||| || | || ||| || || |||||||| || ||||| Sbjct 735740 GAGAGCTCAGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCT 735681 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || ||||| || | | || || || || |||||| | || ||| ||| ||| | | Sbjct 735680 CCGGATCAGCAGAGATTAATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACCTTGGCT 735621 Query 22390 GATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || || || ||| | || || ||| | || ||| | || ||| Sbjct 735620 GATTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTTCTCCGGTTGAGAGGTGGT 735564 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || || ||||| ||| | ||||| || || |||| || || ||||||| Sbjct 14989924 TACAGATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAA 14989983 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | || || | ||| | | || || || || ||||||||||| ||||| || | Sbjct 14989984 GCTCTGACACAATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGG 14990043 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||| || | ||||| || ||||| || ||||| |||||| ||| ||| | | || | Sbjct 14990044 ATCAGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACCTTGGCTGACT 14990103 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||| || || ||||||||| | || || || Sbjct 14990104 ACAACATCCAGAAGGAATCCACCCTCCACTTGGT 14990137 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||||||||| || ||||| | || || || || ||||||| || || || | | Sbjct 8338975 AGATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCT 8339034 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || | || || || || |||||||| || ||||| || |||| Sbjct 8339035 CTGACACCATTGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGATC 8339094 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | | || || || || |||||| |||| ||| ||| ||| | | ||||||| Sbjct 8339095 AGCAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACCTTGGCAGATTACA 8339154 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| || ||||| || ||| | ||||| ||| | || || | || ||| Sbjct 8339155 ACATCCAGAAAGAGTCAACCCTTCATTTGGTTCTCCGGCTGAGAGGTGGT 8339204 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || ||||||| || || ||||| | || || || | | | Sbjct 6990424 ATGCAGATTTTTGTAAAGACCCTAACCGGCAAGACTATCACTTTGGAGGTTGAGAGCTCA 6990365 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| |||||||||||||| || || ||||| || || Sbjct 6990364 GACACAATCGATAACGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAG 6990305 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| |||||| | || || || ||| || | ||||||||| Sbjct 6990304 CAGAGACTCATCTTTGCCGGGAAACAGCTTGAAGACGGACGTACCCTCGCTGATTACAAC 6990245 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || |||||||| || ||| | ||| Sbjct 6990244 ATCCAAAAAGAGTCTACCCTGCAT 6990221 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||||| || || || || |||| | ||||| || | | | Sbjct 8339433 ATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACTATCACCTTGGAAGTTGAGAGCTCA 8339492 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || ||||| || ||||| || || ||||| || ||| Sbjct 8339493 GACACAATTGATAACGTCAAGGCTAAGATTCAGGAAAAGGAAGGGATCCCACCAGACCAA 8339552 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || || |||||| | |||||| ||||| | | ||||||||| Sbjct 8339553 CAAAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACACTAGCGGATTACAAC 8339612 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || | || ||||| | || || ||| Sbjct 8339613 ATTCAGAAGGAGTCAACCCTTCACCTTGTGTTGCGTCTTCGTGGTGGT 8339660 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| ||||||| || ||| | ||||| || ||||| | | Sbjct 14990157 ATGCAGATTTTCGTCAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTGGAGAGTTCT 14990216 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | ||| || || ||||||||||||||||| || || || || Sbjct 14990217 GACACCATCGACAACGTTAAAGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 14990276 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| || || | ||||| | | ||| | ||||||||||| Sbjct 14990277 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTTGCCGATTACAAC 14990336 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | ||| | ||| | | | || |||||| Sbjct 14990337 ATCCAGAAGGAGTCCACCCTTCATCTTGTTCTCAGGCTTCGTGGAGGT 14990384 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || ||||||| || || ||||| | || ||||| | | | Sbjct 735335 ATGCAGATTTTTGTCAAGACCCTAACCGGCAAGACCATCACTTTGGAGGTGGAGAGCTCT 735276 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | ||||| || ||||| |||||||| || || ||||| || || Sbjct 735275 GACACAATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 735216 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || ||| | || ||| |||||| | | ||||||||| Sbjct 735215 CAGAGACTCATCTTCGCTGGGAAGCAGCTCGAAGATGGACGCACCCTAGCGGATTACAAC 735156 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | || || || Sbjct 735155 ATCCAGAAGGAGTCTACCCTTCACTTGGT 735127 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || ||||| || || |||| ||||| || || | | || Sbjct 2562836 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACCATCACCCTTGAGGTTGAGAGCTCC 2562777 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || || ||||| || || || || || || Sbjct 2562776 GACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCAG 2562717 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| ||||| | | || |||||| Sbjct 2562716 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGCACACTGGCAGACTACAAC 2562657 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || ||||| ||| | || || || | || | || || |||||| Sbjct 2562656 ATTCAGAAGGAATCGACCCTTCACTTGGTCCTCCGTCTCCGTGGTGGTTTT 2562606 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || ||||| | || || || | | | Sbjct 735107 ATGCAAATCTTTGTGAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTTGAGAGCTCA 735048 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | ||||| |||||||| |||||||| || || ||||| || || Sbjct 735047 GACACAATCGACAACGTCAAAGCTAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG 734988 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || ||| | || ||| |||||| | | ||||||||| Sbjct 734987 CAGAGACTCATCTTCGCTGGGAAGCAGCTCGAAGATGGACGCACCCTAGCGGATTACAAC 734928 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 734927 ATCCAGAAGGAGTCGAC 734911 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | ||||| || || ||||| | || || || | | | Sbjct 6990196 ATGCAAATTTTTGTGAAGACCCTTACCGGCAAGACCATCACTTTGGAGGTTGAGAGCTCA 6990137 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| || ||||| |||||||| || || ||||| || || Sbjct 6990136 GACACTATTGATAACGTTAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 6990077 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || |||||| | |||||| || || | | ||||||||| Sbjct 6990076 CAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTCTTGCAGATTACAAC 6990017 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || || | || || ||| Sbjct 6990016 ATCCAGAAGGAGTCTACTCTTCACTTGGTT 6989987 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || || || |||| | || || || | | | Sbjct 8339661 ATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATCACGTTGGAGGTTGAGAGCTCA 8339720 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||||||||| || || || || || || Sbjct 8339721 GACACCATTGACAACGTCAAGGCCAAGATACAAGACAAGGAAGGGATCCCTCCGGACCAG 8339780 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || |||||| | |||||| || || | | ||||||||| Sbjct 8339781 CAGAGACTCATCTTCGCTGGAAAACAGCTTGAGGATGGTCGGACACTGGCAGATTACAAC 8339840 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || || | || || ||| Sbjct 8339841 ATCCAGAAGGAGTCGACTCTTCACTTGGTT 8339870 >seq7 Length=17303919 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | ||||| ||||| | ||||| ||||| || | | | Sbjct 14231875 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTACTCTAGAAGTTGAGAGCTCT 14231816 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || ||||| || || ||||||||||| || || || || || ||| Sbjct 14231815 GACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCAA 14231756 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| ||||| ||||| || | |||||| || || | | ||||||||| Sbjct 14231755 CAACGACTTATCTTTGCGGGCAAGCAACTCGAGGATGGTCGGACACTTGCGGATTACAAC 14231696 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || || | ||||| ||| Sbjct 14231695 ATCCAGAAGGAGTCAACTCTGCATTTGGTT 14231666 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| ||| |||| || || || | | ||||||||| |||| | || Sbjct 14232331 ATGCAAATCTTTGTTAAGACTCTAACTGGCAAGACCATAATTCTTGAAGTTGAAAGCTCC 14232272 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || ||||||||||| || || | || || || Sbjct 14232271 GACACCATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCTACTGGACCAG 14232212 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| | ||| || || || | |||||| ||| || | | |||||||| Sbjct 14232211 CAGAGACTTATCTATGCGGGGAAGCAACTTGAGGATGGCCGTACTTTGGCGGATTACAAT 14232152 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || |||| || ||| | | ||| | ||||| Sbjct 14232151 ATTCAGAAGGAGTCAACTCTACACTTGGTTCTTAGGTTGAGAGGAGG 14232105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| ||||| | || || || || |||| | | Sbjct 14231647 ATGCAAATATTCGTCAAGACCCTTACCGGAAAAACCATAACACTGGAGGTTGAAAGCTCA 14231588 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || ||||||||||| || || | ||| || || Sbjct 14231587 GACACAATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCTACCAGACCAG 14231528 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || ||||| || | |||||| ||| ||| | | ||||||||| Sbjct 14231527 CAGAGACTTATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACCCTAGCGGATTACAAC 14231468 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || || || | || |||| |||| Sbjct 14231467 ATCCAGAAGGAGTCAACACTTCACCTAGTGCTGCG 14231433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || ||||| || || ||||| ||||||| || || || | | | Sbjct 14231420 GATGCAGATTTTTGTCAAGACTTTGACGGGCAAAACCATCACTCTAGAGGTCGAGAGCTC 14231361 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || | | || || ||||||||||| || || || |||| || || Sbjct 14231360 TGATACGATTGATAACGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCACACCGGACCA 14231301 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| ||||| | || ||| || || | | |||||||| Sbjct 14231300 GCAGAGACTAATCTTTGCCGGTAAACAACTCGAAGATGGTCGAACACTTGCAGATTACAA 14231241 Query 22398 CATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 14231240 TATCCAGAAAGAGTCTAC 14231223 >seq2 Length=14066726 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || ||||| | ||| | || || || | | | Sbjct 7053605 ATGCAGATCTTTGTGAAGACGTTGACAGGAAAAACCATTACTTTGGAGGTTGAGAGCTCT 7053546 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | ||| || ||||| |||||||| || ||||| || ||||| Sbjct 7053545 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 7053486 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || || |||||||||||| ||||| | | ||||||||| Sbjct 7053485 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAAC 7053426 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 7053425 ATCCAAAAGGAGTCTAC 7053409 Score = 109 bits (120), Expect = 5e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 22209 ATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGT 22268 |||| | ||||||||||||| || ||||| | || || || || | |||||||| || Sbjct 7053843 ATTTTTGCAGATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGT 7053784 Query 22269 GGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCC 22328 || | | | || || | ||| || | || ||| ||||| |||||||| || || || Sbjct 7053783 AGAGAGCTCTGACACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCC 7053724 Query 22329 ACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 || ||||| ||| | | || |||||||| |||||| | |||||| || ||| | | Sbjct 7053723 TCCGGATCAGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGC 7053664 Query 22389 CGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||||| || || || ||||| || | || || ||| Sbjct 7053663 GGATTACAATATACAGAAGGAATCAACTCTCCACTTGGTT 7053624 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || | ||| | || || || | | Sbjct 7053149 ATGCAGATTTTTGTGAAGACCCTCACAGGAAAGACCATAACTTTGGAGGTTGAGAGTTCA 7053090 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| || ||||| || |||||||| || ||||| || || Sbjct 7053089 GACACAATCGATAATGTCAAAGCTAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAG 7053030 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || |||||| | |||||| ||||| | | ||||||||| Sbjct 7053029 CAGAGACTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGCACACTTGCGGATTACAAC 7052970 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| || | || | || ||||| | || || ||| Sbjct 7052969 ATCCAAAAAGAATCTACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGT 7052922 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | ||||| || || | ||| | || || || | | | Sbjct 7053377 ATGCAGATTTTTGTGAAGACCCTTACCGGAAAGACCATAACTTTGGAGGTTGAGAGCTCA 7053318 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || ||||| |||||||| || || ||||| || ||| Sbjct 7053317 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAA 7053258 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || |||||| | || ||| |||||| | | ||||||||| Sbjct 7053257 CAGAGACTCATCTTTGCTGGGAAACAGCTTGAAGATGGTCGCACCCTTGCTGATTACAAC 7053198 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 7053197 ATCCAAAAGGAGTCTAC 7053181 >seq1 Length=19566579 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||||||||| | || || ||||| || | | Sbjct 19036986 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 19037045 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||| || |||||||||||||| || || | ||| || ||| Sbjct 19037046 GACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCAACCAGACCAA 19037105 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || |||||||| ||||| ||| | || ||| || || | || ||||||||| Sbjct 19037106 CAGAGACTCATATTTGCAGGCAAGCAGCTCGAAGATGGTCGAACGCTTTCAGATTACAAC 19037165 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||| ||| Sbjct 19037166 ATCCAGAAAGAATCAACC 19037183 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || || | ||||| || || | ||| | ||||| || | | | Sbjct 19037669 GATGCAGATTTTTGTAAAGACCCTTACCGGAAAGACAATAACTTTGGAAGTTGAGAGCTC 19037728 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | ||| || | || ||| || ||||||||||| || || |||| || || Sbjct 19037729 GGACACAATTGACAATGTAAAGGCAAAGATCCAAGACAAGGAAGGGATCGCACCAGACCA 19037788 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | || || || || || |||||| | |||||| ||||| | | |||||||| Sbjct 19037789 ACAAAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCAGATTACAA 19037848 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| ||||| || || ||| Sbjct 19037849 CATCCAAAAGGAGTCAACC 19037867 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| ||||| ||||| || || || | || || || || || | Sbjct 8289742 AAAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACAATAACCCTAGAGGTAGAGTC 8289801 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | ||| || | ||| || || ||||||||||| || || ||||| || Sbjct 8289802 ATCAGACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGGA 8289861 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| || || ||||| |||||| | || || | || || |||| || Sbjct 8289862 CCAGCAGCGTCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTA 8289921 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| || ||||| || || | ||||| || | || || | |||||| Sbjct 8289922 CAACATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGGT 8289973 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | ||||| ||||| | ||| | ||||| || | | | Sbjct 19037213 GATGCAGATCTTCGTCAAGACCCTTACCGGCAAAACCATAACTTTGGAAGTTGAGAGCTC 19037272 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | | || ||| || ||||||||||| || || |||| || || Sbjct 19037273 TGACACGATCGATAACGTGAAGGCAAAGATCCAAGACAAGGAAGGGATATCACCAGACCA 19037332 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| ||||||||| | || ||| |||||| | | |||||||| Sbjct 19037333 ACAGAGACTCATCTTTGCAGGCAAACAGCTCGAAGATGGCCGCACTCTTGCAGATTACAA 19037392 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || ||||| || ||| | ||| | || || || | || || || Sbjct 19037393 CATCCAGAAAGAGTCAACCCTCCATCTTGTGCTGAGACTCCGTGGTGG 19037440 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || || | || || || || | ||| | ||||| || | | | Sbjct 19037441 GATGCAGATTTTTGTAAAGACCCTTACTGGAAAGACTATAACTTTGGAAGTTGAGAGCTC 19037500 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | | || || || ||||||||||| || ||| |||| || || Sbjct 19037501 TGACACAATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATTGCACCAGACCA 19037560 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | || || ||||| || |||||| | |||||| ||||| | | |||||||| Sbjct 19037561 ACAAAGACTCATTTTTGCTGGAAAACAGCTTGAGGATGGTCGCACTCTTGCTGATTACAA 19037620 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| || || Sbjct 19037621 CATCCAGAAAGAGTCAAC 19037638 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || |||||||| ||| || || | || |||| ||||| ||||||| | Sbjct 19037897 GATGCAGATATTTGTTAAGGATTTGACGGGAAGCACCATCACGCTTGAGGTGGAAAGCTT 19037956 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG-ATC 22336 ||||| | ||| || | || | | ||||| ||||| || || || ||||||| | | Sbjct 19037957 TGATACGATTGACAATGTGAAGGCACAGATTCAGGACAAAGAAGGGAT-CCACCCGGACC 19038015 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||| | |||| ||||| || || ||| | || ||| | ||| | | ||||||| Sbjct 19038016 AACAGAGGCTTAACTTTGCAGGGAAGCAGCTCGAAGATGGTCACACTTTAGCGGATTACA 19038075 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| || ||||| || || Sbjct 19038076 ACATCCAGAAAGAGTCAAC 19038094 >seq5 Length=13709650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||||||||| || || || ||||| |||| || || || | || || || ||||| | Sbjct 13270368 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTGGAGTC 13270427 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | ||| || | ||| || || ||||||||||| || || ||||| || Sbjct 13270428 GTCAGACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGGA 13270487 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || || | ||||| ||||| || ||| | || || |||||| | |||| || Sbjct 13270488 CCAGCAGCGGTTGATATTCGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGGCCGACTA 13270547 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || || ||||| || Sbjct 13270548 CAACATCCAGAAGGAATCGAC 13270568 >seq4 Length=14994381 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22307 TTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGT 22366 |||| ||||| |||||||| ||||| ||||||||| | || || ||||| || || || Sbjct 9870907 TTCAGGACAAAGAGGGTATACCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAGCAAC 9870966 Query 22367 TAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAG 22426 | || ||| ||| ||| | | ||||||||||| || ||||| || || | ||| | | Sbjct 9870967 TCGAAGATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTG 9871026 Query 22427 TTTTG 22431 | ||| Sbjct 9871027 TCTTG 9871031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724045768745