Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 seq2 89.7 4e-13 seq7 84.2 2e-11 seq4 84.2 2e-11 >seq6 Length=16577294 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || ||||||||||| ||| | || || || Sbjct 8339205 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACCATCACCCTTGAGGTTGAGAGTTCA 8339264 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || || ||||||||||| | || | || Sbjct 8339265 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 8339324 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| || |||||| |||| ||| || | || ||||||||| Sbjct 8339325 CAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTTGCGGATTACAAT 8339384 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| |||| | ||| | || || || Sbjct 8339385 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTTCGTCTCCGTGGTGG 8339431 >seq2 Length=14066726 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||||| || || || || |||||| |||| || | || Sbjct 7052921 ATGCAAATCTTTGTGAAAACATTGACAGGTAAGACTATTACCTTGGAGGTTGAGAGCTCA 7052862 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| || ||| || |||||||| | || | |||| Sbjct 7052861 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAAGAGGGGATCCCACCAGACCAG 7052802 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| ||||| || || ||| ||| |||| ||||| || Sbjct 7052801 CAGAGACTCATCTTTGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCTGATTATAAC 7052742 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| ||||| || |||| | ||| | || || || Sbjct 7052741 ATCCAAAAGGAATCAACTCTCCACTTGGTTCTTCGTCTTCGTGGTGG 7052695 >seq7 Length=17303919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||||||||||| ||| || || ||||| || ||| ||| |||| |||| Sbjct 14232216 ACCAGCAGAGACTTATCTATGCGGGGAAGCAACTTGAGGATGGCCGTACTTTGGCGGATT 14232157 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGG-TATTACGTTTACGAGGAGG 22060 |||||||||||||||| || ||||| || ||| | ||| ||| | ||||||| Sbjct 14232156 ACAATATTCAGAAGGAGTCAACTCTACACTTGGTTCTTAGGTTGA-GAGGAGG 14232105 Score = 82.4 bits (90), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||||| |||||||| || |||||||| |||||| ||| | || |||| Sbjct 14231304 ACCAGCAGAGACTAATCTTTGCCGGTAAACAACTCGAAGATGGTCGAACACTTGCAGATT 14231245 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||||| ||||| || ||||||||||| Sbjct 14231244 ACAATATCCAGAAAGAGTCTACTCTTCA 14231217 >seq4 Length=14994381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| |||| | ||||| || || ||||||||||| || ||||| ||| Sbjct 9870912 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAGCAACTCGAA 9870971 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||| |||| |||||||| || ||||| || |||||||||||| | || || Sbjct 9870972 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 9871030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358121426128642