Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 116 7e-21 >seq5 Length=13709650 Score = 116 bits (128), Expect = 7e-21 Identities = 373/567 (66%), Gaps = 20/567 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | ||| ||||||||| || || | || || Sbjct 2138740 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCTGAAGAAGTAGATCTC 2138681 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGA-----AAAGT-TTTTCCTC 42413 | | |||| || |||||| || |||| ||||| || || ||| || Sbjct 2138680 TCACAAGACAACCGCGATTGGGAG-AACAGTCT--CAACGACGGCGAACGTCACTTCATC 2138624 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 ||| || | || || |||||||| || || ||||| || || ||||| || || | Sbjct 2138623 AAACACGTCCTCGCTTTCTTCGCTGCATCCGACGGAATCGTTTTAGAGAATCTCGCTTCT 2138564 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGC 42532 |||||||| || || || || |||||||| ||| |||||||| |||||||| || Sbjct 2138563 CGGTTCATGTCCGATGTCCAAGTCTCGGAGGCGCG-TGCTTTCTACGGTTTCCAGATCGC 2138505 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || ||||| | || |||||| |||| || ||| | || |||||| ||| Sbjct 2138504 GATTGAGAATATTCATTCTGAGATGTATAGTCTTCTTCTCGATACTTACATCAAAGATAA 2138445 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | ||| | || || ||| || || |||||||| || ||| || |||||| || Sbjct 2138444 CAAAGAGAGAGACCATCTCTTCCGCGCGATTGAGACGATTCCTTGCGTCGCGAAGAAAGC 2138385 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGCTGGTA 42710 | |||||| | || |||||||| | || | || || || | || | | || Sbjct 2138384 TCAGTGGGCGATGAAATGGATCGA-----CGGATCTCAGACCTTTGCTGAACGAATCGTT 2138330 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 || || | || || || ||||||||||| || |||| ||||||||||||||| Sbjct 2138329 GCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTT 2138270 Query 42771 AAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| | ||| || ||||| || | || ||||| |||||| | ||| | ||||| Sbjct 2138269 AAGAAACGAGGACTC-ATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCGAGACGA 2138211 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCT 42856 || | || | ||||| || ||||| Sbjct 2138210 AGGCTTACACTGCGACTTCGCGTGCCT 2138184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330075322480