Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7 129 5e-25 >seq7 Length=17303919 Score = 129 bits (142), Expect = 5e-25 Identities = 174/241 (72%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 20281 GGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGA 20340 |||||||||||| || || || | |||||| || | || | |||||||| ||||| || Sbjct 2150001 GGCAATGTTAAATGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGA 2149942 Query 20341 AAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400 ||| || || | || |||||||| ||| |||| ||| || || ||||| |||||||| Sbjct 2149941 AAGTTCTCCATTTGCAACATAAAACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAA 2149882 Query 20401 CGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATT--- 20457 | || || | |||||||| || |||| ||||||| |||||| | ||||| || Sbjct 2149881 CTTCAGATCAGGAGGGTTCCAAGCTGACATTATGATTCGTCTATCATCAGGATTGTTCTT 2149822 Query 20458 --TTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCA 20515 |||| |||| | | || || | | || ||||| || ||||| ||||| |||||| Sbjct 2149821 GATTTTGTTAATTAC---ATCTA--AGAGCTGATCAAATCCTTGGCCAGTATAATCAGCA 2149767 Query 20516 T 20516 | Sbjct 2149766 T 2149766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441368535235320