Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 140 8e-28 seq6 136 9e-27 seq4 134 3e-26 seq1 132 1e-25 seq7 125 2e-23 seq2 109 1e-18 >seq5 Length=13709650 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||||| ||| ||| || ||||| || |||||||| Sbjct 13270598 CCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCC 13270539 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || || ||||| |||| ||||| || |||| Sbjct 13270538 AGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGG 13270479 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| ||||||||||| || || || | || ||| || || Sbjct 13270478 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGACGACTCCACC 13270419 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||||||| || || || || ||||| |||||||| Sbjct 13270418 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 13270372 >seq6 Length=16577294 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||||| || || |||||||| || ||||| || Sbjct 14991295 CCACCACGGAGACGGAGGACGAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 14991236 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | ||||| || |||||||| |||||||| || ||| Sbjct 14991235 AAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 14991176 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || ||||| || |||||||| || || ||||| || || || | ||| ||| || Sbjct 14991175 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTC---TCC 14991119 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||||||||||| |||||||| || |||||||| Sbjct 14991118 ACTTCCAGTGTGATGGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14991069 Score = 129 bits (142), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | |||| || ||| || |||||||| || || || Sbjct 8339431 CCACCACGGAGACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCA 8339372 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || ||||||||||| || || ||||| || | ||| ||| |||| Sbjct 8339371 AGTGTGCGACCATCCTCTAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGG 8339312 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424 ||||| |||||||||||||| || || || || || || |||| | || | ||| | Sbjct 8339311 ATTCCCTCTTTATCCTGGATCTTAGCCTTAACATTGTCAATAG--TGTCTGAACTCTCAA 8339254 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| || || || |||| |||||| || || |||||||| Sbjct 8339253 CCTCAAGGGTGATGGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 8339205 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || ||| || || || || ||||| || Sbjct 2562610 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGCC 2562669 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| |||||||| |||||||| || ||| Sbjct 2562670 AGTGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 2562729 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||||||||| || || |||||||| || || | || |||| || Sbjct 2562730 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTC---TCA 2562786 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||||||||||| ||||| || || |||||||| Sbjct 2562787 ACCTCAAGGGTGATGGTCTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 2562836 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || | ||||| ||| ||||| ||||| || ||||| || Sbjct 735337 CCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 735396 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || |||| || || || || ||||| || | |||||| ||| Sbjct 735397 AGTGTACGGCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGG 735456 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || |||||||| || || || ||||| || |||| || |||| || Sbjct 735457 ATACCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATAGTGTCAGAGCTC---TCA 735513 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 735514 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 120 bits (132), Expect = 7e-22 Identities = 168/233 (72%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || | |||| || || || ||||| || ||||| || Sbjct 14991067 CCACCACGGAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 14991008 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | |||||||| |||||||| |||||||| || ||||| Sbjct 14991007 AAGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGG---TCTGGA 14990951 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| ||||||||||| || || |||||||| || || | || ||| Sbjct 14990950 GGAATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAACTC--- 14990894 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||||||||||| |||||||| || |||||||| Sbjct 14990893 TCCACCTCCAAGGTGATAGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14990841 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || ||||||| || || || ||||| || ||||| || Sbjct 2562838 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 2562897 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | ||||| || |||||||| || | ||| || ||| Sbjct 2562898 AATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGG 2562957 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || |||||||| || || |||||||| || || | || |||| || Sbjct 2562958 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCTGAGCTC---TCA 2563014 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| ||||| ||||||||||| || |||||||| Sbjct 2563015 ACCTCCAAGGTTATTGTCTTGCCGGTGAGAGTCTTGACAAAAATCTGCAT 2563064 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || ||||||| || || || ||||| || ||||| || Sbjct 2563294 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 2563353 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||||| || | ||| ||||| ||||||||||| | ||| || ||| Sbjct 2563354 AAAGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGG 2563413 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| || ||||||||||| || || || ||||| || || | || ||| || Sbjct 2563414 ATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAACTC---TCC 2563470 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| |||||||| ||||||||||| || ||||| Sbjct 2563471 ACCTCCAAAGTGATAGTCTTTCCGGTCAGCGTCTTGACGAAGATTTGCAT 2563520 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| |||||||| | || ||||||||||| || || || ||| Sbjct 6990198 CCACCACGGAGACGAAGCACGAGATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGCG 6990257 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||||||||| | ||||| || || ||||| || | ||| || |||| Sbjct 6990258 AGGGTACGTCCGTCTTCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 6990317 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || || || || || || || ||||| || || | || |||| || Sbjct 6990318 ATCCCTTCCTTGTCTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCA 6990374 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 6990375 ACCTCCAAAGTGATAGTCTTGCCGGTTAGGGTCTTTACAAAAATCTGCAT 6990424 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| || |||| || || ||||||||||| ||||| || Sbjct 6990654 CCACCACGAAGACGAAGTACAAGGTGAAGGGTCGACTCCTTTTGGATATTGTAGTCAGCA 6990713 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||||||| | || || || ||||| || || | ||| || |||| Sbjct 6990714 AGAGTCCTTCCGTCTTCAAGCTGCTTGCCCGCGAATATAAGCCTCTGCTGGTCCGGTGGG 6990773 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| |||||||| ||||| || ||||| || || || || | || |||| || Sbjct 6990774 ATTCCCTCTTTATCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTC---TCA 6990830 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || || || |||| ||||| || || |||||||| Sbjct 6990831 ACCTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6990880 Score = 105 bits (116), Expect = 2e-17 Identities = 169/240 (70%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || | || | ||| ||| || || || || ||||| || Sbjct 2563522 CCACCACGAAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 2563581 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || ||||| || ||||| || | || ||| ||| Sbjct 2563582 AAGGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATAAGCCTTTGCTGATCCGGAGGG 2563641 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || |||||||| || || || ||||| || || | || ||| ||| Sbjct 2563642 ATACCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCT---TTCC 2563698 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 || ||||| ||||| ||||||||||| |||||||| || || ||||||| | ||| |||| Sbjct 2563699 ACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACAAAGATCTGCA-TCTGTAATTC 2563757 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| || | || | ||||| || || || ||||| || ||| Sbjct 14990575 TCCTTTTGGATGTTGTAGTCAGCCAAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAG 14990516 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || |||||| || ||||| |||||||| || || |||||||| Sbjct 14990515 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCCTGGATCTTGGCCTTCACGTTG 14990456 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| || || || | ||||| ||||||||||||| |||||| Sbjct 14990455 TCGATGGTGTCAGAACTC---TCCACCTCCAAGGTGATAGTCTTCCCGGTCAACGTCTTG 14990399 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 14990398 ACAAAGATTTGCAT 14990385 >seq4 Length=14994381 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| ||| || || ||||| || |||||||| Sbjct 14616824 CCACCACGGAGACGGAGGACAAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGGCT 14616765 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || |||||||| || | || ||||| ||||| |||| ||||| || ||| Sbjct 14616764 AAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGCGGG 14616705 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || |||||||| || || ||||| || || || | || || ||||| Sbjct 14616704 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGATGACTCTACC 14616645 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| || || || || ||||| |||||||| Sbjct 14616644 TCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 14616598 >seq1 Length=19566579 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || | ||||| ||| ||||| ||||| || ||||||||||| || | |||||| Sbjct 8289957 AGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCGAGTGTTCTCCCGTCT 8289898 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||||| || ||||||||||||||||| || |||||| ||||| || || Sbjct 8289897 TCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCT 8289838 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| ||||||||||| || || || | || || ||||| || || || || ||| Sbjct 8289837 TGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACCTCTAGGGTTATTGTC 8289778 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || | || || || || ||||||||| Sbjct 8289777 TTCCCCGTTAAGGTTTTCACAAAGATCTGCATT 8289745 Score = 120 bits (132), Expect = 7e-22 Identities = 168/233 (72%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| || || ||||| | || ||||| ||||| || || || || Sbjct 19037440 CCACCACGGAGTCTCAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCTGCA 19037381 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||||| ||||| ||||| || | |||||| ||||| Sbjct 19037380 AGAGTGCGGCCATCTTCGAGCTGTTTGCCTGCAAAGATGAGTCTCTGTTGG---TCTGGT 19037324 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| || || ||||| || || |||||||| || || | || |||| Sbjct 19037323 GATATCCCTTCCTTGTCTTGGATCTTTGCCTTCACGTTATCGATCGTGTCAGAGCTC--- 19037267 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | || || || || ||||| || ||||||||||| |||||||| Sbjct 19037266 TCAACTTCCAAAGTTATGGTTTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 19037214 Score = 107 bits (118), Expect = 5e-18 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||| |||||| || |||| || |||||| ||||| || || || | Sbjct 19037212 CCACCTCTCAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAA 19037153 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 ||||| || || ||||| | || || ||||| || || || | |||||| ||||| Sbjct 19037152 AGCGTTCGACCATCTTCGAGCTGCTTGCCTGCAAATATGAGTCTCTGTTGG---TCTGGT 19037096 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || || || || ||||| || || || || | || | | ||| Sbjct 19037095 TGGATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATGGTGTC--TGAACTCT 19037038 Query 288424 --ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || ||||| || |||||||||||||||||||| Sbjct 19037037 CGACTTCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 19036986 Score = 86.0 bits (94), Expect = 1e-11 Identities = 163/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||| ||| | || || || |||| || ||||| ||||| || || || || Sbjct 19038125 TCCACCGGCGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCCGC 19038066 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||| | || ||||| | || || ||||| ||| | || | |||||| || || Sbjct 19038065 TAAAGTGTGACCATCTTCGAGCTGCTTCCCTGCAAAGTTAAGCCTCTGTTGG---TCCGG 19038009 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 | || |||||||| ||||| || | || ||||| || || || | ||| ||| Sbjct 19038008 GTGGATCCCTTCTTTGTCCTGAATCTGTGCCTTCACATTGTCAATCGTATCAAAGCT--- 19037952 Query 288420 TTCTACTTCGAGCGTGATCGT-CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || |||||||| || ||||||| ||| | ||| || ||||||||||| Sbjct 19037951 TTCCACCTCAAGCGTGATGGTGCTTCCCG-TCAAATCCTTAACAAATATCTGCAT 19037898 >seq7 Length=17303919 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | ||| || || |||| || ||||| |||||||| || || || Sbjct 14231192 TCCACCGCGGAGACGAAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCTGC 14231251 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| | |||||| || || ||||| || | ||| || || Sbjct 14231252 AAGTGTTCGACCATCTTCGAGTTGTTTACCGGCAAAGATTAGTCTCTGCTGGTCCGGTGT 14231311 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||| |||||||| || || || || || |||||||| || || | ||| |||| || Sbjct 14231312 GATCCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTATCAATCGTATCAGAGCTC---TC 14231368 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || || |||| ||||||||| || |||||||| Sbjct 14231369 GACCTCTAGAGTGATGGTTTTGCCCGTCAAAGTCTTGACAAAAATCTGCAT 14231419 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| ||||| || | || || || ||||| | ||| || ||||| ||| Sbjct 14232597 TCCTTTTGAATATTGTAGTCAGCCAATGTACGACCATCTTCAAGTTGCTTGCCTGCAAAG 14232656 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || || || ||||| ||||| ||||| || || || || Sbjct 14232657 ATAAGCCTCTGCTGG---TCCGGAGTAATACCTTCCTTATCTTGGATCTTAGCCTTGACA 14232713 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| ||| || || || || || ||||||||||| |||||| Sbjct 14232714 TTGTCAATCGTGTCAGAGCT---TTCAACCTCAAGAGTTATGGTCTTCCCGGTAAGAGTC 14232770 Query 288457 TTGACGAATATCTGCAT 288473 || || || |||||||| Sbjct 14232771 TTAACAAAGATCTGCAT 14232787 Score = 89.7 bits (98), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| || || || ||||| || || || || Sbjct 14231421 CCACCACGAAGACGCAGCACTAGGTGAAGTGTTGACTCCTTCTGGATGTTGTAATCCGCT 14231480 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || || || | ||| || || |||||||| || | ||| || ||||| Sbjct 14231481 AGGGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATAAGTCTCTGCTGG---TCTGGT 14231537 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||| ||||| || || ||||| || || || || || ||||| | || ||| | Sbjct 14231538 AGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCTATTGTGTCTGAGCT---T 14231594 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || ||||| || |||||||||||||| ||||| Sbjct 14231595 TCAACCTCCAGTGTTATGGTTTTTCCGGTAAGGGTCTTGACGAATATTTGCAT 14231647 >seq2 Length=14066726 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | |||||| ||||| | || || |||||||| || || || || Sbjct 7053151 CCACCTCTGAGACGAAGTACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 7053210 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||||| || || ||||| || | |||||| |||| Sbjct 7053211 AGGGTGCGACCATCTTCAAGCTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGG 7053270 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || ||||| || || || || ||||| || || | || |||| || Sbjct 7053271 ATTCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTC---TCA 7053327 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| ||||| || ||||| || || |||||||| Sbjct 7053328 ACCTCCAAAGTTATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 7053377 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || || || ||||| || || || | |||||||| || || Sbjct 7052958 TTCTTTTTGGATGTTGTAATCCGCAAGTGTGCGACCATCCTCAAGCTGTTTTCCAGCAAA 7053017 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||| || |||||| || || |||||||| || || ||||| || || Sbjct 7053018 GATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTTAGCTTTGACATT 7053077 Query 288402 TTCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | | || | ||| || || | || || ||||| || || || ||||| Sbjct 7053078 ATCGATTG--TGTCTGAACTCTCAACCTCCAAAGTTATGGTCTTTCCTGTGAGGGTCTTC 7053135 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 7053136 ACAAAAATCTGCAT 7053149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179642716629094