Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 141 2e-28 >seq5 Length=13709650 Score = 141 bits (156), Expect = 2e-28 Identities = 568/881 (64%), Gaps = 34/881 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||||| || || | || ||||| ||||| ||||| || | ||| |||| ||| Sbjct 2138761 TTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGG 2138702 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAA---CTCAAT 242991 ||| | || ||||| ||| |||| | ||| ||| ||||| ||||| Sbjct 2138701 ACCGCTGAAGAAGTAGATCTCTCACAAGACAACCGCGATTGG---GAGAACAGTCTCAAC 2138645 Query 242992 GACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATT 243051 |||| ||||||||| |||||||||||| | || | ||| ||||| | ||||| || || Sbjct 2138644 GACGGCGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCTGCATCCGACGGAATC 2138585 Query 243052 GTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCA 243110 || | || ||||| | | || ||| || || || | ||||| || Sbjct 2138584 GTTTTAGAGAATCT-CGCTTCTCGGTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGC 2138526 Query 243111 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTC 243166 || || | || ||| | ||| | ||| ||| |||||||| ||| ||||| Sbjct 2138525 TTTCTACGGTTTCCAGATCGCGATTGA--GAA--TATTCATTCTGAGATGTATAGTCTTC 2138470 Query 243167 TTATCGACGCGCTTATTTC--AGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGA 243224 || |||| |||| || |||| | ||||| || || | || ||| ||| || || Sbjct 2138469 TTCTCGA--TACTTACATCAAAGATAACAAAGAGAGAGACCATCTCTTCCGCGCGATTGA 2138412 Query 243225 AAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG--- 243281 | ||||| || || || || | ||||| ||| ||| | || ||| Sbjct 2138411 GACGATTCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGA---CGGATC 2138355 Query 243282 TAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGG 243341 | | | |||||||| || |||| || | | || ||||||||||| | || ||||| Sbjct 2138354 TCAGACCTTTGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGG 2138295 Query 243342 GAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 || |||||| ||||||| ||||| ||| ||| | |||||||| | | | || Sbjct 2138294 AAGCTTCTGCTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTC 2138235 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATT 243460 ||||| || ||| ||| ||||| ||| | ||| | |||| ||| ||||| || Sbjct 2138234 AAACGAATTGATCTCTCGAGACGAAGGCTTACACTGCGACTTCGCGTG-CCTTATCTACA 2138176 Query 243461 CAAAGCTCCAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAG 243517 | ||| | | ||||| |||| | || || ||| | || || | Sbjct 2138175 CGCTTCTCAAAACGAAGCT---TAGCGAAGAGCGCGTGAAGTCGATCGTATGCGACGCGG 2138119 Query 243518 TTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACT 243577 | || | ||| | ||| || | |||||||| |||| ||| | | |||| |||||| Sbjct 2138118 TGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAACC 2138059 Query 243578 CTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTT 243637 || | ||| | ||||| || || || ||||| || | |||| |||||||| | Sbjct 2138058 AGGATTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGGTGCGCTTGGGT 2137999 Query 243638 ATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAG 243697 | | ||| ||||| | || || |||| | ||||| || || |||||||||| Sbjct 2137998 ACGGGAAGGTGTATGGTGTGACTAATCCTTTTGATTGGATGGAACTTATCTCGCTTCAAG 2137939 Query 243698 GGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||| || ||||||||||| || || || | ||||| ||| Sbjct 2137938 GGAAGACGAACTTCTTCGAGAAACGCGTTGGCGATTACCAA 2137898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102869077007550