Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5 109 7e-19 seq1 86.0 7e-12 >seq5 Length=13709650 Score = 109 bits (120), Expect = 7e-19 Identities = 184/262 (70%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | ||| || ||||| | || |||||||| || || ||| Sbjct 2138208 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 2138267 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || || || ||||||||||| || || ||||| ||||| Sbjct 2138268 TTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 2138327 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 |||| || || |||||||||| | || | ||| | ||| |||||||||||||| Sbjct 2138328 GCAACGATTCGTTCAGCAAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 2138384 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 126302 || || ||| ||| || || | |||| ||||| ||||| | | ||| | | || Sbjct 2138385 GCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGGAAGAGATGGTCTCTCTCTTTG 2138444 Query 126303 ATGGATCTTTGATGTACTTATC 126324 | |||||||||||| |||| Sbjct 2138445 TT--ATCTTTGATGTAAGTATC 2138464 >seq1 Length=19566579 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | Sbjct 17296151 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--T 17296208 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | ||| || || | | ||| | || || |||||||| ||||| ||||| || ||| Sbjct 17296209 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 17296268 Query 10994 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || | ||| || || || || | ||| | ||||| ||||| ||||| Sbjct 17296269 CAAGG-GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 17296327 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 ||| || | |||||||| | | ||| | || || ||| || || | ||| || Sbjct 17296328 CACGAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCTTCCCC 17296387 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | || | ||| | ||||||||| ||||| ||||| Sbjct 17296388 AGCTACAGCCCTGGCCAAGAGGGTCTTACCCGTACCAGG 17296426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597347828070840