Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 116 4e-21 seq5 107 2e-18 seq1 102 9e-17 seq2 96.9 4e-15 seq7 89.7 6e-13 seq4 82.4 8e-11 >seq6 Length=16577294 Score = 116 bits (128), Expect = 4e-21 Identities = 148/197 (75%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || || || || | || || |||||||| |||||||| Sbjct 734916 CTCCTTCTGGATGTTGTAATCCGCTAGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCGAA 734975 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||||| ||||||||| | ||| | | ||||||||| ||| |||| | ||||| || Sbjct 734976 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATTTTAGCTTTGA-CG 735033 Query 42136 TCGCC-ACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | ||||| |||| || || || | |||||||| || || || || ||| Sbjct 735034 TTGTCGATTGTGTCTGAGCTC---TCAACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTC 735090 Query 42192 TTTACAAAGATTTGCAT 42208 || |||||||||||||| Sbjct 735091 TTCACAAAGATTTGCAT 735107 Score = 114 bits (126), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | ||||||||| | ||| ||| || || || ||||| ||||| Sbjct 735336 ACCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGC 735395 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || |||||||||||||| || || || || | ||| ||||| | || Sbjct 735396 TAGTGTACGGCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGG 735455 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| ||| |||| ||| | | | ||||| |||| | Sbjct 735456 GATACCTTCCTTGTCCTGGATCTTTGCCTTGA-CGTTGTCGATAGTGTCAGAGCTC---T 735511 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 735512 CAACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 114 bits (126), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| |||||||| ||||| ||||||| |||| || |||||||| || ||||| Sbjct 6990689 CTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCTTCAAGCTGCTTGCCCGCGAA 6990748 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||| || | ||||||||| | ||| | | ||| || || ||| || ||||| | Sbjct 6990749 TATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGGATCTTGGCTTTGACATT 6990808 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || |||| |||||||||||||| || | ||||| Sbjct 6990809 GTCAATGGTGTCTGAGCTC---TCAACCTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTT 6990865 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 6990866 CACAAAGATCTGCAT 6990880 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || || | ||||| || | || |||||| || || ||||||||||| Sbjct 735564 ACCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 735623 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||| ||||||||||| || | || |||||| || | || Sbjct 735624 CAAGGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGG 735683 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || ||||||||| ||| ||| || | | | | ||||| |||| || Sbjct 735684 AATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTC---TC 735740 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| ||||| ||||| || || ||||| |||||||| Sbjct 735741 GACCTCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||||| || ||| ||||| || ||||||||||| || || || | Sbjct 6990209 ACGAAGCACGAGATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGCGAGGGTACGTCC 6990268 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||| || || || || ||||||| ||||||||| | ||| | | ||||| Sbjct 6990269 GTCTTCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTT 6990328 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 || | ||| | |||| |||| | | | ||||| |||| || || || | | Sbjct 6990329 GT-CTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCAACCTCCAAAG 6990384 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| ||||| ||||||||||| || ||||| Sbjct 6990385 TGATAGTCTTGCCGGTTAGGGTCTTTACAAAAATCTGCAT 6990424 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| ||||| ||||| | || || ||||| || |||||||| Sbjct 8339852 CTCCTTCTGGATGTTGTAATCTGCCAGTGTCCGACCATCCTCAAGCTGTTTTCCAGCGAA 8339793 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||| ||||||||| | || | | |||||||| || || |||| ||| Sbjct 8339792 GATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGTATCTTGGCCTTGA-CGT 8339734 Query 42137 CGCCACCG-TGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | || | |||| |||| || || || | |||||| || ||||| || | |||| Sbjct 8339733 TGTCAATGGTGTCTGAGCTC---TCAACCTCCAACGTGATAGTCTTGCCTGTCAAAGTCT 8339677 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 8339676 TCACAAAGATTTGCAT 8339661 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || ||||| || || |||| || |||||||| |||||||| Sbjct 2562646 TCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAG 2562705 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || ||||| ||| ||| || || | ||| Sbjct 2562706 ATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTT 2562764 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||||| |||| || || || | |||||||| || || || | |||||| Sbjct 2562765 GTCAATGGTGTCGGAGCTC---TCAACCTCAAGGGTGATGGTCTTCCCGGTCAACGTCTT 2562821 Query 42194 TACAAAGATTTGCAT 42208 ||||| || ||||| Sbjct 2562822 CACAAAAATCTGCAT 2562836 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | ||||||||| | ||| ||| || || || ||||||||||| Sbjct 6990425 ACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGC 6990484 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || |||||||||||||| || || || || | |||||| || | ||| Sbjct 6990485 CAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGG 6990544 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||| || || ||| || ||||| | | | || || |||| || Sbjct 6990545 GATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTC---TC 6990601 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 6990602 AACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATCTGCAT 6990652 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| ||||||| ||| || | || || ||||| || |||||||| Sbjct 14991260 CTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAA 14991201 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | ||||||||| ||| || || | | Sbjct 14991200 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 14991141 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| ||||| || | |||||||| || || || | ||||| Sbjct 14991140 GTCAATGGTGTCGGAGCTC---TCCACTTCCAGTGTGATGGTCTTCCCGGTCAAGGTCTT 14991084 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 14991083 GACAAAGATCTGCAT 14991069 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||||||| | |||||||| | ||| ||| || || || |||||||| || Sbjct 6990881 ACCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGC 6990940 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||| ||||| ||||| || | || |||||||| | || Sbjct 6990941 CAAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGG 6991000 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || ||||||||| ||| ||| || | | | | ||||| |||| || Sbjct 6991001 AATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TC 6991057 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || || || || || || || |||||||| Sbjct 6991058 GACCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||||| ||||| || | || ||||||||| || ||||| ||||| Sbjct 14990612 ACCTCCACGCAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGC 14990553 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || | |||||| ||||| || || | | ||||||||| | ||| Sbjct 14990552 CAAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGG 14990493 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATT 42156 | | ||| |||||| ||| || || | ||| | | | ||||| ||| | Sbjct 14990492 GATACCCTCTTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAACTC---T 14990437 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || | ||||| || || || || | |||||| |||||||||||||| Sbjct 14990436 CCACCTCCAAGGTGATAGTCTTCCCGGTCAACGTCTTGACAAAGATTTGCAT 14990385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | || | || |||||| ||||| |||||||| || || || || | Sbjct 8339648 ACGCAACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCCGCTAGTGTGCGACC 8339589 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| ||||||||||| ||||||| || ||||| | ||| | | ||||| Sbjct 8339588 ATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTT 8339529 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 ||| ||| | || | |||| | | | ||||| |||| || || || | | Sbjct 8339528 TTCC-TGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTC---TCAACTTCCAAGG 8339473 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| || | ||||| ||||| |||||||| Sbjct 8339472 TGATAGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCAT 8339433 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||| ||||| |||| || || ||||| || ||||| Sbjct 2563329 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAA 2563388 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | | |||||| ||| ||| || || | ||| Sbjct 2563389 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAA-CGT 2563447 Query 42137 CGCC-ACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| ||||| || | ||||| || || || || ||||||| Sbjct 2563448 TGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATAGTCTTTCCGGTCAGCGTCT 2563504 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||||||||| Sbjct 2563505 TGACGAAGATTTGCAT 2563520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | |||||||| | || ||| || || || |||||||| || Sbjct 8339204 ACCACCTCTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGC 8339145 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || |||||||| ||||||||||| || | || ||||| || | || Sbjct 8339144 CAAGGTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGG 8339085 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || ||||||||| ||| || || | | | | ||||| |||| || Sbjct 8339084 AATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTC---TC 8339028 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| ||||| || || || || || || |||||||| Sbjct 8339027 AACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 >seq5 Length=13709650 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || |||||||| || |||| || |||||||| || |||||| Sbjct 13270562 TCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAT 13270503 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||||||||| | ||| | | |||||||| ||| || ||| | | Sbjct 13270502 ATCAACCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG 13270443 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| ||| ||||| || | || ||||| || |||||||| || || || Sbjct 13270442 TCGATCGTGTCTGACGACTCCACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 13270383 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 13270382 AAGATCTGCATCTT 13270369 >seq1 Length=19566579 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | ||| | ||||||||| | || ||| || || || ||||| || || Sbjct 8289973 ACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGC 8289914 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | | |||| || ||||| || || ||||| || || ||||||||||| | ||| Sbjct 8289913 GAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGG 8289854 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| || ||| | | | | |||||| || || || Sbjct 8289853 GATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTAC 8289794 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || || || || ||||||| || || |||||||| |||||||| Sbjct 8289793 CTCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 8289743 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| || ||||| || | || || ||||| ||||||||||| Sbjct 19037861 CTCCTTTTGGATGTTGTAATCTGCAAGAGTGCGACCATCCTCAAGCTGTTTACCAGCGAA 19037802 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||| || ||||| | || | | |||||||| ||| ||| || | | Sbjct 19037801 GATGAGTCTTTGTTGGTCTGGTGCGATCCCTTCCTTGTCTTGGATCTTTGCCTTTACATT 19037742 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | || || || || || || || ||||| Sbjct 19037741 GTCAATTGTGTCCGAGCTC---TCAACTTCCAAAGTTATTGTCTTTCCGGTAAGGGTCTT 19037685 Query 42194 TACAAAGATTTGCAT 42208 |||||| || ||||| Sbjct 19037684 TACAAAAATCTGCAT 19037670 >seq2 Length=14066726 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | ||| | ||| | || ||||||||| || ||||||||||| Sbjct 7053378 ACCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGC 7053437 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || |||| |||||||||||| || || || | |||||| || | || Sbjct 7053438 AAGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 7053497 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| | || | || | | | | | | || || |||| | Sbjct 7053498 AATCCCTTCCTTGTCC-TGAATCTTAGCTTTAACATTGTCAATAGTATCAGAGCTC---T 7053553 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | || |||||||| || || | |||||| |||||||| ||||| Sbjct 7053554 CAACCTCCAAAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || || |||||||||| |||||| | || || ||||| || ||||| || Sbjct 7052731 TCCTTTTGGATGTTATAATCAGCCAAAGTCCGACCATCCTCAAGCTGTTTCCCAGCAAAG 7052790 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 ||||||| ||||||||| | ||| | | ||| |||||| ||| | || | |||| | Sbjct 7052791 ATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCC-TGAATCTTAGCCTTGACGTT 7052849 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | || || || || || || | || || Sbjct 7052850 ATCAATTGTGTCTGAGCTC---TCAACCTCCAAGGTAATAGTCTTACCTGTCAATGTTTT 7052906 Query 42194 TACAAAGATTTGCAT 42208 |||||||||||||| Sbjct 7052907 CACAAAGATTTGCAT 7052921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | || | ||| | || ||||||||| || ||||||||||| Sbjct 7053150 ACCACCTCTGAGACGAAGTACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGC 7053209 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||| || ||||| || ||||||| ||| ||||| | ||| Sbjct 7053210 AAGGGTGCGACCATCTTCAAGCTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGTGG 7053269 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| | || | |||| | | | ||||| |||| | Sbjct 7053270 GATTCCTTCCTTGTCC-TGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTC---T 7053325 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | || ||||| || || || || ||||| ||||| || ||||| Sbjct 7053326 CAACCTCCAAAGTTATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 7053377 >seq7 Length=17303919 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || | | ||||| || | || |||||| |||||||||||||| ||| Sbjct 14232105 CCTCCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTCTGAATATTGTAATCCGCC 14232164 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || || ||||| || || | || |||| ||||||||| | | Sbjct 14232165 AAAGTACGGCCATCCTCAAGTTGCTTCCCCGCATAGATAAGTCTCTGCTGGTCCAGTAGG 14232224 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||| ||| || |||| | | | |||||| ||| || Sbjct 14232225 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGAGCTTTCAACT 14232284 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | | ||||| ||||| ||||| ||||| |||||||||||||| Sbjct 14232285 TCAAGAATTATGGTCTTGCCAGTTAGAGTCTTAACAAAGATTTGCAT 14232331 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| || |||||| || || |||||||| || || ||||| | || || Sbjct 14231667 ACCAAATGCAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGTGTCCGACCATCCTCG 14231726 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| || || || || ||||| || ||||| | || | | |||||||| | Sbjct 14231727 AGTTGCTTGCCCGCAAAGATAAGTCGTTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTGG 14231786 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || || ||||| | | | ||||| |||| || || || | || |||||| Sbjct 14231787 ATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTC---TCAACTTCTAGAGTAATGGTT 14231843 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || || ||||| |||||||| Sbjct 14231844 TTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14231875 >seq4 Length=14994381 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || | || || |||| || |||||||| || ||||| Sbjct 14616789 CTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 14616730 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||||||| | || | | ||||||||| ||| || || | | Sbjct 14616729 AATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 14616670 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || || || |||| ||||| || || |||||||| || || || Sbjct 14616669 GTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 14616610 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 14616609 GAAGATCTGCATCTT 14616595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207551206320