Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq6 93.3 3e-14 seq2 91.5 1e-13 seq7 89.7 4e-13 seq5 87.8 1e-12 >seq1 Length=19566579 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || ||||| || |||||||| ||| ||| ||||| ||||||| Sbjct 8289954 ACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCGAGTGTTCTCCCGTCTTCC 8289895 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| || ||| | |||| |||||| ||||| ||| || ||||||||||| Sbjct 8289894 AGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGG 8289835 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || || || || ||||| |||| ||| || || || Sbjct 8289834 ATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACCTCTAGGGTTATTGTCTTC 8289775 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || | ||||| ||||| || ||||| ||| Sbjct 8289774 CCCGTTAAGGTTTTCACAAAGATCTGCATTTTT 8289742 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || || | || | |||||||| || ||||| || ||||||||||| Sbjct 19037212 CCACCTCTCAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAA 19037153 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTC-GTTTGG 15068 || ||| | ||||| | || ||||| || |||| | | ||||||||| | |||| Sbjct 19037152 AGCGTTCGACCATCTTCGAGCTGCTTGCCTGCAAATATGAGTCTCTGTTGGTCTGGTTGG 19037093 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 | | ||||||||||| ||| || ||| ||| | || || || || | | || || Sbjct 19037092 A-TCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATGGTGTCTGAACTCTCGAC 19037034 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||||||||||||||| || || || || || || || |||||| Sbjct 19037033 TTCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCATA 19036985 >seq6 Length=16577294 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| ||||| || || || ||||||||||| ||| | | | || || Sbjct 6989987 AACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTC 6990046 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| |||||| | || | | ||| ||||| ||| || ||||||||||| Sbjct 6990047 AAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTG 6990106 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| || | || ||||| || | || || || || || ||||| || Sbjct 6990107 AATCTTGGCTTTAACGTTATCAATAGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTCTT 6990166 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||||||||||||| Sbjct 6990167 GCCGGTAAGGGTCTTCACAAAAATTTGCATA 6990197 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| ||||| ||||| || ||||| || |||||||||||| Sbjct 6990882 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 6990941 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||| | ||||| || ||| | ||||| | || ||||| ||| Sbjct 6990942 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 6991001 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || ||||| || ||| | || || || || | || || Sbjct 6991002 ATGCCTTCCTTGTCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCGAC 6991060 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 6991061 CTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| || | | ||| ||||||||||| || ||||| || ||||||||||| || Sbjct 8339203 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 8339144 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||||| ||||| |||||| | ||||| | || || || || Sbjct 8339143 AAG-GTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGG 8339085 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||||||||| || || || ||| | || || || || | || || Sbjct 8339084 AATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAAC 8339025 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || || ||||| || ||||||||||| Sbjct 8339024 CTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||||||||| || || || || |||||||||||| || |||| |||| || Sbjct 14990366 AACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTC 14990307 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | ||||| | ||| ||||| || || || |||||||| Sbjct 14990306 GAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTG 14990247 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| || | || || || || | | || || || | ||||| || || Sbjct 14990246 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCACCTCGAGAGTAATCGTCTT 14990187 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || ||||| |||||| Sbjct 14990186 TCCGGTTAGGGTTTTGACGAAAATCTGCATA 14990156 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || || ||||||||||| || || || ||||||||||| ||| || | | | ||||| Sbjct 735127 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGCT-AGGGTGCGTCCATCTTC 735185 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || |||||| | || | | ||| ||||| ||| || ||||||||||| Sbjct 735186 GAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTG 735245 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| || | || || || || | || || || || || ||||| || Sbjct 735246 AATCTTGGCTTTGACGTTGTCGATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTCTT 735305 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || |||||||| |||||| Sbjct 735306 GCCGGTTAGGGTCTTGACAAAAATCTGCATA 735336 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| |||||||| |||||||| ||||||||||| ||| | | ||||||| | || Sbjct 6990221 ATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGCGAGGGTACGTCCGTCTTCAAGCTG 6990280 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 ||| || || | || | | ||| ||||| ||| || ||||||||||| ||| || Sbjct 6990281 TTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATCTT 6990340 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || || | || || || || | || || || || || || || || || | Sbjct 6990341 TGC-CTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTCTTGCCGG 6990399 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 | || || ||||||||||| |||||| Sbjct 6990400 TTAGGGTCTTTACAAAAATCTGCATA 6990425 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023 || || || ||||||||||| || ||||| |||||||| || || || |||| |||| Sbjct 14990596 AAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAG-GTTCTGCCGTC 14990538 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 || || || || ||||| | ||||| | ||| ||||| ||| || || || ||||| Sbjct 14990537 CTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTC 14990478 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||| || || | || || || || | | || || || ||||| || || Sbjct 14990477 CTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATAGT 14990418 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || || ||||| ||||||||| Sbjct 14990417 CTTCCCGGTCAACGTCTTGACAAAGATTTGCATA 14990384 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| ||| | | ||| || || ||||| || || || || ||||||||||| || Sbjct 735565 CCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 735624 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| | ||||| |||||| | || || | ||| || || || Sbjct 735625 AAG-GTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGG 735683 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||| ||||||||||| || ||||| || ||| | || || || || | || | Sbjct 735684 AATGCCTTCCTTGTCCTGGATCTTTGC-CTTCACATTGTCGATGGTGTCTGAGCTCTCGA 735742 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || ||||| || || || || ||||| |||||||||||||| Sbjct 735743 CCTCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||||||| || ||||| |||||||| || | | | | | || || | || Sbjct 14991272 ATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTG 14991213 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | || | |||||| ||||| || || ||||||||||| || || Sbjct 14991212 TTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTT 14991153 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||| | || || || | || ||||| || || || Sbjct 14991152 GGCCTTCACATTGTCAATGGTGTCGGAGCTCTCCACTTCCAGTGTGATGGTCTTCCCGGT 14991093 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || |||||| Sbjct 14991092 CAAGGTCTTGACAAAGATCTGCATA 14991068 >seq2 Length=14066726 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || ||||| ||||||||||| || | | | || ||||| || Sbjct 7053402 ATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTGCGACCATCCTCTAACTG 7053461 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | || | | ||| || || ||||| ||||||||||| ||| || Sbjct 7053462 CTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTT 7053521 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || |||||||| | || || || || ||||||||||| ||||| Sbjct 7053522 AGCTTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTTTTTCCTGT 7053581 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || |||||| Sbjct 7053582 CAACGTCTTCACAAAGATCTGCATA 7053606 >seq7 Length=17303919 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| ||||| || || || || || || ||||||||||| Sbjct 14231647 TGCCACCACGAAGACGAAGAACCAAATGCAGAGTTGACTCCTTCTGGATGTTGTAATCCG 14231706 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | || || | ||| ||||| || | || | || |||||||| | Sbjct 14231707 CAAGTGTCCGACCATCCTCGAGTTGCTTGCCCGCAAAGATAAGTCGTTGTTGGTCCGGAG 14231766 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| ||| ||| | || || || || | || | Sbjct 14231767 GGATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTCTCAA 14231826 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | |||| ||||||||||| || || |||||||| ||||| |||||||| Sbjct 14231827 CTTCTAGAGTAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14231875 >seq5 Length=13709650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| ||| ||| | | ||||||| | || Sbjct 13270575 ATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCTTCCAGCTG 13270516 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| ||||||| ||||| ||||| ||| || ||||||||||| || || Sbjct 13270515 CTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTT 13270456 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || || || || |||| ||| ||||| || || || Sbjct 13270455 CGCTTTCACATTGTCGATCGTGTCTGACGACTCCACCTCTAGGGTTATGGTCTTCCCCGT 13270396 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || ||||| ||| Sbjct 13270395 TAGGGTTTTCACGAAGATCTGCATCTTT 13270368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388633032305