Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq6 408 5e-109 seq2 107 2e-18 >seq6 Length=16577294 Score = 408 bits (452), Expect = 5e-109 Identities = 523/718 (73%), Gaps = 2/718 (0%) Strand=Plus/Plus Query 6559 CCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGC 6618 ||| || || ||||| |||||||| ||||| || || || |||| || || | ||| || Sbjct 1968090 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 1968149 Query 6619 CTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTG 6678 ||| ||||||| |||||||||||||| |||||||| |||||||||||||| || Sbjct 1968150 ACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATG 1968209 Query 6679 AATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTT 6738 |||||| || |||| || | || | | ||| || || |||||||||||||| ||||| Sbjct 1968210 AATAGCGCATAGCAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTT 1968269 Query 6739 GAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACC 6798 | ||||| || || || || || | ||||| | ||| || ||||| || || ||||| Sbjct 1968270 CAATGTCCAATTATGAAACCCTTGGAAAAAGAGAATGAATCGAAATATAGCCGCTACACC 1968329 Query 6799 AAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACAC 6858 ||| |||||||||||||||| || || || || ||||| || || |||||||| || Sbjct 1968330 AAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAAC 1968389 Query 6859 AAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-C 6917 ||| ||||||||||||||||| || ||||||||||| || || || | | || ||| | Sbjct 1968390 AAAAACAGCAATGGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATC 1968448 Query 6918 GTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCA 6977 | || | |||||||| || | ||| |||||||| | || || || |||||||| || | Sbjct 1968449 GAGCAAGTTCAAACTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAA 1968508 Query 6978 CAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGAC 7037 |||||| ||| || || || | ||| ||| || |||||||| || ||||| |||| Sbjct 1968509 CAAAAGCCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGAC 1968568 Query 7038 CCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAA 7097 |||| || | | | ||||| | | | | ||||||||| || || ||||| || | Sbjct 1968569 CCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTA 1968628 Query 7098 GGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGA 7157 ||||| || || || | ||| ||| ||| | || ||||| ||||| || || | Sbjct 1968629 AAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAA 1968688 Query 7158 AAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGAC 7217 | ||||| || |||| |||||| || | || | || ||| |||||| || | |||| Sbjct 1968689 AGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGGAAGAGCAATAGAC 1968748 Query 7218 CTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 | |||||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 1968749 CAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 1968806 >seq2 Length=14066726 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| ||||||| |||| || || ||||| ||||| |||||||||||||| Sbjct 1809114 GTAGGATAAGCGGCACAGGTGAGAACAAACCCTGCATCAATCTGCTCATCATCAAGGAAA 1809173 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | ||| || ||||| |||||||| | | Sbjct 1809174 CTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCAGCACAGCTCGAACAAGAA 1809233 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | || || || ||||| |||||||| || |||| ||| Sbjct 1809234 CCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCAGCGTCAAGAACGTAG 1809293 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| ||||||||| Sbjct 1809294 ACGTCGTCGTCACACTCAA 1809312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622118788719120