Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 1e-15 seq1 84.2 3e-11 >seq5 Length=13709650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 381/586 (65%), Gaps = 22/586 (4%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | ||| || ||||| | || |||||||| || || ||| Sbjct 2138208 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 2138267 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || || ||||||||||| || || ||||| ||||| Sbjct 2138268 TTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 2138327 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 |||| | || || ||||||| | || | || | ||| |||||||||||||| Sbjct 2138328 GCAACGATTCGTTCAGCAAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 2138384 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 127775 || || ||| ||| || || | |||| ||||| ||||| | | ||| | | || Sbjct 2138385 GCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGGAAGAGATGGTCTCTCTCTTTG 2138444 Query 127776 ATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG--TGGACCATTTC 127833 | |||||||||||| |||| | || || ||| || | | || | | || Sbjct 2138445 TT--ATCTTTGATGTAAGTATCGAGAAG--AAGACTATACATCTCAGAATGAATATTCTC 2138500 Query 127834 ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGG-CA- 127891 | | | ||| | ||||||||| ||||| || | || | |||||| || Sbjct 2138501 AATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGGA---CATCGGACAT 2138557 Query 127892 -AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGAT 127950 || | || |||||| ||||| ||||| ||||| |||| || || || |||| Sbjct 2138558 GAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCAGCGAAGAAAGCGAGGAC 2138617 Query 127951 ATACTTTATGAATTTCTGTTCATTCTCGTTCAG---GGTCTTCCAGTCGTCGAGATCCTT 128007 | || ||||| | |||| ||||| || | ||| ||| ||| | || | Sbjct 2138618 GTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCCAATCGCGGTTGTCTTG 2138677 Query 128008 TGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATAGAGTTCCC 128066 |||||||||||| || || || ||||| | | | || | || ||||| || | |||| Sbjct 2138678 TGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCG-GCTTTCTTGTACATCTCCC 2138736 Query 128067 AGAGGTGGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGT 128112 ||| || || || | | ||||||| ||||||| | |||| Sbjct 2138737 AGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGT 2138782 >seq1 Length=19566579 Score = 84.2 bits (92), Expect = 3e-11 Identities = 188/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | | Sbjct 17296152 AATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--TC 17296209 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | ||| | || || |||||||| || |||||||| || |||| Sbjct 17296210 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATAC 17296269 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 | || | ||| || || || || | ||| | ||||| ||||| |||||| Sbjct 17296270 AAGG-GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACCC 17296328 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 || || | ||||||||| | | ||| | || || ||| || || | ||| || Sbjct 17296329 ACGAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCTTCCCCA 17296388 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | ||| | ||||||||| ||||| || || Sbjct 17296389 GCTACAGCCCTGGCCAAGAGGGTCTTACCCGTACCAGG 17296426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501271986680