Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 134 2e-26 seq4 118 1e-21 seq1 109 6e-19 seq6 104 3e-17 seq2 82.4 9e-11 >seq5 Length=13709650 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||||||| | || ||||| ||||| |||||||||| |||||||| | Sbjct 13270587 ACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCC 13270528 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| |||||||||||||| ||||||||||| | || | | ||||| Sbjct 13270527 GTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCTTCCTT 13270468 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| || | | | | |||||| ||| ||||| || | || || Sbjct 13270467 GTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGACGACTCCACCTCTAGGGTTAT 13270408 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||| || ||||| || ||||| || ||||| ||||| || Sbjct 13270407 GGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 13270369 >seq4 Length=14994381 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || || || |||| ||||||||||| |||||||| Sbjct 14616789 CTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 14616730 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | ||| | | ||||||||| |||||| ||| | | Sbjct 14616729 AATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 14616670 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | ||||| || || ||||| || ||||| || Sbjct 14616669 GTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 14616610 Query 46582 AAAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 14616609 GAAGATCTGCATCTT 14616595 >seq1 Length=19566579 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| ||| | || ||| || ||||| |||||||||| Sbjct 8289972 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCG 8289913 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | |||| || ||||| || |||||||| |||| ||||||||||| | || Sbjct 8289912 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 8289853 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||||||| || | | | | |||||| || || || Sbjct 8289852 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACC 8289793 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || || || || ||||| | ||||| |||||||| |||||||| Sbjct 8289792 TCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 8289743 >seq6 Length=16577294 Score = 104 bits (114), Expect = 3e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||||||| |||||||| | | |||||| | || || Sbjct 14991277 ACGAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCA 14991218 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| ||||| ||||| || | ||||||||||| | || | | ||||||||| | Sbjct 14991217 AGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 14991158 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||| | | | | ||||| |||| ||||| |||| |||||||| Sbjct 14991157 ATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTC---TCCACTTCCAGTGTGATGGTC 14991101 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| || || |||||||| ||||| Sbjct 14991100 TTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14991069 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | | ||| | |||| ||||| ||||| |||||||| Sbjct 2563329 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAA 2563388 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | | |||||| ||| |||||| ||| | ||| Sbjct 2563389 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAA-CGT 2563447 Query 46522 CGCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| ||||| |||| ||||| || || || |||||||| | Sbjct 2563448 TGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATAGTCTTTCCGGTCAGCGTCT 2563504 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||||||||| Sbjct 2563505 TGACGAAGATTTGCAT 2563520 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||||||||| | ||||| | |||| || ||||||||||| ||||| Sbjct 6990689 CTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCTTCAAGCTGCTTGCCCGCGAA 6990748 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||| | | ||||||||| | || | | ||| || || |||||| |||| | Sbjct 6990749 TATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGGATCTTGGCTTTGACATT 6990808 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||||||||| |||| || || Sbjct 6990809 GTCAATGGTGTCTGAGCTC---TCAACCTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTT 6990865 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 6990866 CACAAAGATCTGCAT 6990880 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| |||| || | ||| |||||||||||| |||||||| | Sbjct 14990611 CCTCCACGCAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 14990552 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | |||| || | |||||| || || || ||||| | ||||||||| | || Sbjct 14990551 AAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 14990492 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||| |||||| |||||| ||| | ||| | | | ||||| ||| || Sbjct 14990491 ATACCCTCTTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAACTC---TC 14990436 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| ||||| || || || |||| ||| || |||||||||||||| Sbjct 14990435 CACCTCCAAGGTGATAGTCTTCCCGGTCAACGTCTTGACAAAGATTTGCAT 14990385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | ||| |||||| ||||| ||||| || | ||| ||||| | Sbjct 735120 ACGAAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGCTAGGGTGCGTCC 735179 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| || ||||| || | | ||||||||| | || | | ||||| Sbjct 735180 ATCTTCGAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTT 735239 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| ||||| |||| ||| | | | ||||| |||| ||||| |||| | Sbjct 735240 GTCCTGAATCTTGGCTTTGA-CGTTGTCGATTGTGTCAGAGCTC---TCCACCTCCAAAG 735295 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| ||||| || || || || ||||| || ||||| Sbjct 735296 TGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 735335 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||||||| | |||| ||| | || ||| || ||||| ||||| |||| Sbjct 6990882 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 6990941 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || ||||| || |||||||| ||||| | |||||||| | || Sbjct 6990942 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 6991001 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||||||||| |||||| ||| | | | | ||||| |||| || Sbjct 6991002 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCG 6991058 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| || || || || ||||| || || |||||||| Sbjct 6991059 ACCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | ||| ||||| | || ||||||||||| || ||||| Sbjct 734916 CTCCTTCTGGATGTTGTAATCCGCTAGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCGAA 734975 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | ||||||||| ||| || ||| ||| Sbjct 734976 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATTTTAGCTTTGACGT 735034 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || |||| |||||||| || || || || || | Sbjct 735035 TGTCGATTGTGTCTGAGCTC---TCAACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCT 735091 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||||||||| Sbjct 735092 TCACAAAGATTTGCAT 735107 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||| | || ||||| |||| || |||||||| || ||||| Sbjct 2562646 TCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAG 2562705 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | || ||||| ||| |||||| ||| | ||| Sbjct 2562706 ATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTT 2562764 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || || | |||||||| || || |||| ||| || Sbjct 2562765 GTCAATGGTGTCGGAGCTC---TCAACCTCAAGGGTGATGGTCTTCCCGGTCAACGTCTT 2562821 Query 46579 AACAAAGATTTGCAT 46593 ||||| || ||||| Sbjct 2562822 CACAAAAATCTGCAT 2562836 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | || || || | || || ||||| || || ||||| Sbjct 8339852 CTCCTTCTGGATGTTGTAATCTGCCAGTGTCCGACCATCCTCAAGCTGTTTTCCAGCGAA 8339793 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | |||||||| ||||| ||||| ||| Sbjct 8339792 GATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGTATCTTGGCCTTGA-CGT 8339734 Query 46522 CGCCACCG-TGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | || | |||| |||| || || |||| |||||| || ||||| |||| || | Sbjct 8339733 TGTCAATGGTGTCTGAGCTC---TCAACCTCCAACGTGATAGTCTTGCCTGTCAAAGTCT 8339677 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||||||||| Sbjct 8339676 TCACAAAGATTTGCAT 8339661 >seq2 Length=14066726 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||| ||||| | ||| |||||||||||| ||||| || | Sbjct 7053379 CCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 7053438 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || | |||||| || || || || | | |||||| || | || Sbjct 7053439 AGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 7053498 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||||||| ||||| ||| | | | | | | || || |||| || Sbjct 7053499 ATCCCTTCCTTGTCCTGAATCTT-AGCTTTAACATTGTCAATAGTATCAGAGCTC---TC 7053554 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || |||||||| || |||| ||| || |||||||| ||||| Sbjct 7053555 AACCTCCAAAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232938383960