Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq5 132 5e-26 seq6 122 9e-23 seq4 114 1e-20 seq7 111 2e-19 seq2 89.7 5e-13 >seq1 Length=19566579 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||||||||| || || || ||||| | ||||| || || || ||| | || || ||| Sbjct 8289741 AAAAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACAATAACCCTAGAGGTAGAGT 8289800 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | |||| | | | | |||| || |||| ||||| || || || || | | Sbjct 8289801 CATCAGACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGG 8289860 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| || ||||||||||| |||| | | || ||| ||||| Sbjct 8289861 ACCAGCAGCGTCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACT 8289920 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| || || ||||||| ||||||||||| ||| ||||||| || Sbjct 8289921 ACAACATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGG 8289972 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||||||||| || | || || ||| | | Sbjct 19037214 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAAACCATAACTTTGGAAGTTGAGAGCTCT 19037273 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||| |||| ||||| || || || | | ||||| Sbjct 19037274 GACACGATCGATAACG-TGAAGGCAAAGATCCAAGACAAGGAAGGGATATCACCAGACCA 19037332 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | ||||| | || ||||||||||| || || | ||||| || || ||||| Sbjct 19037333 ACAGAGACTCATCTTTGCAGGCAAACAGCTCGAAGATGGCCGCACTCTTGCAGATTACAA 19037392 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||| || || | || || ||| | |||||| Sbjct 19037393 CATCCAGAAAGAGTCAACCCTCCATCTTGTGCTG 19037426 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || || || || |||||||| ||| | || |||||| | Sbjct 19036986 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 19037045 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||||| || || | ||||| || || || | | |||||| Sbjct 19037046 GACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCAACCAGACCAA 19037105 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | ||||| | || ||||| ||||| || || | || || || || |||||| Sbjct 19037106 CAGAGACTCATATTTGCAGGCAAGCAGCTCGAAGATGGTCGAACGCTTTCAGATTACAAC 19037165 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || || | || || || ||||||| || Sbjct 19037166 ATCCAGAAAGAATCAACCCTTCACCTTGTACTTCGACTGAGAGGTGG 19037212 >seq5 Length=13709650 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || ||||| ||||| || ||||| || ||||| ||| | || || ||| Sbjct 13270367 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTGGAGT 13270426 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | |||| | | | | |||| || |||| ||||| || || || || | | Sbjct 13270427 CGTCAGACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGG 13270486 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| |||||| | || | ||| || || |||||||| |||| ||||| || ||||| Sbjct 13270487 ACCAGCAGCGGTTGATATTCGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGGCCGACT 13270546 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| |||||| ||||||| ||| ||||||| ||| Sbjct 13270547 ACAACATCCAGAAGGAATCGACGCTTCATCTGGTGCTCCGT 13270587 >seq6 Length=16577294 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || || |||||||| | || |||||| | | Sbjct 6991108 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 6991049 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | ||| |||| ||||| || || ||||| | ||||| Sbjct 6991048 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 6990989 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || |||||||| || || | |||||| | ||| |||||| Sbjct 6990988 CAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACAAC 6990929 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || |||||||| || ||||| ||||| || Sbjct 6990928 ATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTTAAGAGGTGG 6990882 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| |||| || ||| | | Sbjct 735563 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTTGAGAGCTCT 735504 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||| |||| ||||| || || || || | ||||| Sbjct 735503 GACACTATCGACAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCA 735445 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| |||| || | || || || ||||| || || | || || || |||||||| Sbjct 735444 ACAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGCCGTACACTAGCTGACTACAA 735385 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || || ||||||||||| ||| ||||||| || Sbjct 735384 CATCCAGAAAGAGTCCACCCTTCATTTGGTGCTTCGTCTGAGAGGTGG 735337 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || ||||| |||||||| |||| |||||| | | Sbjct 735791 ATGCAAATTTTTGTGAAAACACTAACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCA 735732 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| |||| ||||| || || ||||| | || || Sbjct 735731 GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 735672 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | ||| || |||||||| || || | || ||| | || |||||| Sbjct 735671 CAGAGATTAATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACCTTGGCTGATTACAAC 735612 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| || || ||||| || || |||||||| || Sbjct 735611 ATCCAGAAGGAGTCGACCCTCCACTTGGTTCTCCGGTTGAGAGGTGG 735565 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||||||||||||| |||| || ||| | | Sbjct 6990880 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGCTCA 6990821 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| || ||||||||||| || | ||||| Sbjct 6990820 GACACCATTGACAATGTCAAAGCCAAGATCCAAGATAAAGAGGGAATCCCACCGGACCAG 6990761 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||||||||| ||||| || |||| | || || |||||||| Sbjct 6990760 CAGAGGCTTATATTCGCGGGCAAGCAGCTTGAAGACGGAAGGACTCTTGCTGACTACAAT 6990701 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || || | || || ||| Sbjct 6990700 ATCCAAAAGGAGTCGACCCTTCACCTTGTACTTCGT 6990665 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | || || || ||||||||| | || || ||| | || Sbjct 2562836 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACCATCACCCTTGAGGTTGAGAGCTCC 2562777 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || || | ||||| Sbjct 2562776 GACACCATTGACAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCA 2562718 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| ||||| || |||||||| Sbjct 2562717 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGCACACTGGCAGACTACAA 2562658 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| |||| || || ||||| || ||| Sbjct 2562657 CATTCAGAAGGAATCGACCCTTCACTTGGTCCTCCGT 2562621 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || ||||| |||||| | || || ||| | | Sbjct 6990652 ATGCAGATCTTTGTGAAGACTCTCACTGGTAAAACAATCACCCTAGAGGTTGAGAGCTCA 6990593 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | |||| || |||| || ||||||||||| || | || || Sbjct 6990592 GATACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGATCAG 6990533 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || ||||| || || | |||||| | || |||||| Sbjct 6990532 CAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGTCGCACCTTGGCTGATTACAAC 6990473 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || ||||||||||| ||| ||||||| || Sbjct 6990472 ATCCAGAAAGAGTCCACCCTCCATTTGGTGCTTCGTCTGAGAGGTGG 6990426 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || ||| | | Sbjct 8338977 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 8339036 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| || || ||||| | || || Sbjct 8339037 GACACCATTGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 8339096 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || |||||||| || || | || ||| | || |||||| Sbjct 8339097 CAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACCTTGGCAGATTACAAC 8339156 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || |||||||| || || ||||||| || Sbjct 8339157 ATCCAGAAAGAGTCAACCCTTCATTTGGTTCTCCGGCTGAGAGGTGG 8339203 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| || || ||| | || || ||| | | Sbjct 2563064 ATGCAGATTTTTGTCAAGACTCTCACCGGCAAGACAATAACCTTGGAGGTTGAGAGCTCA 2563005 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || ||||| || | ||||| Sbjct 2563004 GACACCATTGATAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 2562946 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| ||||||||||| || || | ||||| | |||||||| Sbjct 2562945 GCAGAGGCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACATTGGCTGACTACAA 2562886 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| |||| || ||| | || || Sbjct 2562885 CATCCAGAAGGAGTCGACCCTTCATCTTGTTCT 2562853 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || |||||| |||| || || | | Sbjct 14989929 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 14989988 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| | || |||| ||||| ||||| |||||| | || || Sbjct 14989989 GACACAATCGACAACG-TTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCA 14990047 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || ||| |||| || | || ||| | |||||||| Sbjct 14990048 GCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACCTTGGCTGACTACAA 14990107 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| |||||| | || || || ||||| || Sbjct 14990108 CATCCAGAAGGAATCCACCCTCCACTTGGTCCT 14990140 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || |||||||| | || || ||| | | Sbjct 735107 ATGCAAATCTTTGTGAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTTGAGAGCTCA 735048 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | ||||| || || || || | ||||| Sbjct 735047 GACACAATCGACAACG-TCAAAGCTAAAATTCAGGACAAGGAAGGGATCCCACCAGACCA 734989 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || || ||||| || || | |||||||| || ||||| Sbjct 734988 GCAGAGACTCATCTTCGCTGGGAAGCAGCTCGAAGATGGACGCACCCTAGCGGATTACAA 734929 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || ||||| || ||| Sbjct 734928 CATCCAGAAGGAGTCGACTCTTCACTTGGTCCTTCGT 734892 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || || || ||||| || ||||| | || || ||| | | Sbjct 6990424 ATGCAGATTTTTGTAAAGACCCTAACCGGCAAGACTATCACTTTGGAGGTTGAGAGCTCA 6990365 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||| || | ||||| || || || || | ||||| Sbjct 6990364 GACACAATCGATAACG-TCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCAGACCA 6990306 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | || || |||||||| || |||| || |||||| || ||||| Sbjct 6990305 GCAGAGACTCATCTTTGCCGGGAAACAGCTTGAAGACGGACGTACCCTCGCTGATTACAA 6990246 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| || | || |||||| | ||||| ||| Sbjct 6990245 CATCCAAAAAGAGTCTACCCTGCATCTCGTGCTTCGT 6990209 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| || || || |||||| | || || || | | Sbjct 14990613 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACAATCACCTTGGAAGTTGAAAGCTCG 14990672 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || || | ||||| Sbjct 14990673 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCA 14990731 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || || ||| |||| || | || ||| | ||||||||| Sbjct 14990732 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCTTGGCCGACTACAA 14990791 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || ||||| ||||| Sbjct 14990792 CATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGT 14990828 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| |||||||| | || || ||| | | Sbjct 6990196 ATGCAAATTTTTGTGAAGACCCTTACCGGCAAGACCATCACTTTGGAGGTTGAGAGCTCA 6990137 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||||| || || | ||||| || || || || | ||||| Sbjct 6990136 GACACTATTGATAACG-TTAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 6990078 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || |||||||| || || | || || || || ||||| Sbjct 6990077 GCAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTCTTGCAGATTACAA 6990018 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || ||||| || ||| | | ||||| Sbjct 6990017 CATCCAGAAGGAGTCTACTCTTCACTTGGTTCTTCGTCTTCGTGGCGG 6989970 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || || |||||| | || || ||| | Sbjct 14990841 ATGCAGATCTTTGTCAAGACCTTGACCGGGAAGACTATCACCTTGGAGGTGGAGAGTTCT 14990900 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || ||||| | ||||| Sbjct 14990901 GACACCATTGACAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCAGACCA 14990959 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || |||||||| || || | |||||| | |||||||| Sbjct 14990960 GCAGCGTCTCATCTTCGCTGGAAAACAGCTTGAGGATGGTCGCACCTTGGCTGACTACAA 14991019 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| |||| || || |||||||| Sbjct 14991020 CATCCAGAAGGAGTCGACCCTTCACTTGGTGCT 14991052 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || |||||||| | || || ||| | || Sbjct 14991069 ATGCAGATCTTTGTCAAGACCTTGACCGGGAAGACCATCACACTGGAAGTGGAGAGCTCC 14991128 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || || | ||||| Sbjct 14991129 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAG 14991188 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||||||||| || || | ||||| | ||||||||| Sbjct 14991189 CAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTACAAC 14991248 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || ||| | || || ||| Sbjct 14991249 ATCCAAAAGGAGTCTACCCTTCATCTCGTCCTCCGT 14991284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || || ||| | | Sbjct 735335 ATGCAGATTTTTGTCAAGACCCTAACCGGCAAGACCATCACTTTGGAGGTGGAGAGCTCT 735276 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || || | ||||| || || || || | ||||| Sbjct 735275 GACACAATCGACAACG-TCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 735217 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || || ||||| || || | |||||||| || ||||| Sbjct 735216 GCAGAGACTCATCTTCGCTGGGAAGCAGCTCGAAGATGGACGCACCCTAGCGGATTACAA 735157 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || |||||||| ||| Sbjct 735156 CATCCAGAAGGAGTCTACCCTTCACTTGGTGCTTCGT 735120 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || || || || ||||| | || || ||| | Sbjct 2563520 ATGCAAATCTTCGTCAAGACGCTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGTTCT 2563461 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| | || |||| || || |||||||| ||| | ||||| Sbjct 2563460 GACACCATCGACAACG-TTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCCCCGGACCA 2563402 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || || || || |||| | || | |||||||| Sbjct 2563401 GCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGGACTTTGGCTGACTACAA 2563342 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| |||| || ||| | || || Sbjct 2563341 CATCCAGAAGGAGTCGACCCTTCATCTTGTTCT 2563309 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || ||| | || || || || |||||| | || || ||| | Sbjct 14990385 ATGCAAATCTTTGTCAAGACGTTGACCGGGAAGACTATCACCTTGGAGGTGGAGAGTTCT 14990444 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || || | ||||| Sbjct 14990445 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCA 14990503 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || || ||| |||| |||| | ||| | |||||||| Sbjct 14990504 GCAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCAGAACCTTGGCTGACTACAA 14990563 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || || ||||| ||||| || | || || Sbjct 14990564 CATCCAAAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTGCGTGGAGG 14990611 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || || || || || |||| || ||| | Sbjct 14990157 ATGCAGATTTTCGTCAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTGGAGAGTTCT 14990216 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||||| || |||| ||||| ||||| || || | ||||| Sbjct 14990217 GACACCATCGACAACG-TTAAAGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCA 14990275 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || || || || |||| | ||||| ||| ||||| Sbjct 14990276 GCAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTTGCCGATTACAA 14990335 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| | || || ||| | || || Sbjct 14990336 CATCCAGAAGGAGTCCACCCTTCATCTTGTTCT 14990368 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| || ||||| | || || ||| | | Sbjct 8339661 ATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATCACGTTGGAGGTTGAGAGCTCA 8339720 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| || || || || | ||||| Sbjct 8339721 GACACCATTGACAACG-TCAAGGCCAAGATACAAGACAAGGAAGGGATCCCTCCGGACCA 8339779 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || |||||||| || || | || || || || ||||| Sbjct 8339780 GCAGAGACTCATCTTCGCTGGAAAACAGCTTGAGGATGGTCGGACACTGGCAGATTACAA 8339839 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || ||||| || ||| Sbjct 8339840 CATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGT 8339876 >seq4 Length=14994381 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || ||||| ||||| || ||||| || || |||||| |||| || ||| Sbjct 14616593 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTAGAGT 14616652 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | |||| | | | | | || | || |||| ||||| || ||||| ||||||| Sbjct 14616653 CATCTGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAAT-CCCGCCG 14616711 Query 38359 -ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 |||| ||||| | |||| ||| || || ||||| || |||| || ||| | |||| Sbjct 14616712 GACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACCTTAGCCGAC 14616771 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| ||||| | ||||| || | || || ||| Sbjct 14616772 TACAACATCCAGAAGGAGTCAACGCTTCACCTTGTCCTCCGT 14616813 >seq7 Length=17303919 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || ||||| ||||| ||||||||||| || | || || ||| | | Sbjct 14231875 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTACTCTAGAAGTTGAGAGCTCT 14231816 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| ||||| || || || || | |||||| Sbjct 14231815 GACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCAA 14231756 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | |||||||| || || || || | || || || || |||||| Sbjct 14231755 CAACGACTTATCTTTGCGGGCAAGCAACTCGAGGATGGTCGGACACTTGCGGATTACAAC 14231696 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || ||||||||||| || ||| Sbjct 14231695 ATCCAGAAGGAGTCAACTCTGCATTTGGTTCTTCGT 14231660 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || ||||| ||||| ||||||||||| | | || || ||| | | Sbjct 14232559 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTATTCTAGAAGTTGAGAGCTCT 14232500 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| | ||||| | | ||||| Sbjct 14232499 GACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGTAGGAATCCTACCGGACCAG 14232440 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || || | |||||||| || || || || | || ||||| || ||||| Sbjct 14232439 CAAAGACTTATCCATGCGGGCAAGCAACTCGAGGATGGTCGAACCCTTGCTGATTACAAT 14232380 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| | || || || ||||| || | |||||||| ||| Sbjct 14232379 ATTCAGAAGGAGTCAACACTTCACTTGGTTCTTAGGTTGAGAGGTGGC 14232332 >seq2 Length=14066726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||| || | || || ||| | | Sbjct 7053377 ATGCAGATTTTTGTGAAGACCCTTACCGGAAAGACCATAACTTTGGAGGTTGAGAGCTCA 7053318 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| || ||||| || | ||||| Sbjct 7053317 GACACAATTGATAACG-TCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGACCA 7053259 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | ||||| | || || |||||||| || || | |||||||| || ||||| Sbjct 7053258 ACAGAGACTCATCTTTGCTGGGAAACAGCTTGAAGATGGTCGCACCCTTGCTGATTACAA 7053199 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||| | || || ||| | ||||| || Sbjct 7053198 CATCCAAAAGGAGTCTACTCTCCATCTTGTACTTCGTCTCAGAGGTGG 7053151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167967080320