Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 159 1e-33 seq6 140 1e-27 seq2 138 4e-27 seq8 122 3e-22 seq7 116 1e-20 seq4 93.3 2e-13 seq3 89.7 2e-12 >seq1 Length=19566579 Score = 159 bits (176), Expect = 1e-33 Identities = 423/637 (66%), Gaps = 22/637 (3%) Strand=Plus/Minus Query 451904 GTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGT----CTTCTTA 451959 || ||||| ||||| |||||| | ||||| ||||||||| | | ||| |||||| Sbjct 5572317 GTTCTTGTCGGAGGATCTACAAGGATTCCGAAAATTCAACAGCTTTTGCAAGACTTCTT- 5572259 Query 451960 TTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGC 452019 | || || | ||||| |||||| | || ||||||||||| ||||| ||||| || Sbjct 5572258 ---TAACGGGAAGGAGCTATGCAAGAGCATTAACCCTGATGAAGCCGTTGCTTATGGAGC 5572202 Query 452020 TGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTT 452079 ||| ||||| || ||||| || || ||| || || || | |||| | || | Sbjct 5572201 TGCGGTTCAGGCTGCTATCCTGACTGGTGAAGGAAGCGACAAGGTTCAAGATCTCTTGCT 5572142 Query 452080 AGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTT 452139 | ||||| |||| ||| |||||| |||| ||||| ||||| |||||||| || Sbjct 5572141 TCTTGATGTTGCACCGCTAAGCCTTGGAATTGAGACAGCAGGTGGGGTGATGACTGTGTT 5572082 Query 452140 AATTAAACGAGGA--ACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGT 452197 |||| |||||| || | |||||||||| ||| ||| | | | || | | Sbjct 5572081 AATT--CCGAGGAACACCACGGTTCCTTGTAAGAAGGAGCAA--GTGTTCTCCACGTATT 5572026 Query 452198 --GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAG 452255 || || || ||||| || || ||||| |||||||| ||||| |||| ||| || Sbjct 5572025 CGGACAATCAGCCAGGCGTTCTGATCCAAGTCTTTGAAGGGGAACGGGCAAGGACCAAAG 5571966 Query 452256 ATAATAATAAACTAGGAGAATTTACTCTTTCAA--ACATTCCTCCTATGCCAAGGGGAAC 452313 | || || || || ||| | |||| |||||||||| ||| | ||| Sbjct 5571965 ACAACAACCTTCTTGGTACCTTTGAGC--TCAAGGGCATTCCTCCTGCCCCACGTGGAGT 5571908 Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 ||||||||| | || || ||| | ||||||||||| || | |||||| || | Sbjct 5571907 TCCTCAAATCAATGTTTGCTTTGACATCGATGCAAATGGGATCTTAAATGTGTCGGCGGA 5571848 Query 452374 TGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTAT 452432 || ||| | |||| | |||| | || ||||| || || |||||| | || Sbjct 5571847 GGACAAAACCGCTGGTGTA-AAGAACCAGATCACAATCACGAACGATAAAGGAAGGTTGA 5571789 Query 452433 CTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAAC 452492 |||||| || ||||| || ||||| | || || || || | |||| ||| ||||| | Sbjct 5571788 GTAAAGAGGAGATTGAGAAGATGGTGCAAGACGCTGAGAAGTATAAGGCTGAGGATGAGC 5571729 Query 452493 AAGTTAGAAAACATGTTGAAGCTAAAAACAAACTAGA 452529 |||| | || | || || || || ||| ||| || Sbjct 5571728 AAGTGAAGAAGAAGGTCGAGGCCAAGAACTCACTGGA 5571692 Score = 122 bits (134), Expect = 3e-22 Identities = 207/297 (70%), Gaps = 5/297 (2%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||| | | || || | |||||||| ||||| ||||| || |||| | || || || Sbjct 5572911 GTTAATAACGCTGTTGTGACTGTTCCTGCTTACTTCAACGACTCACAGAGACAGGCTACC 5572852 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || || || ||| ||| |||| | ||||| || || ||||| |||||||| || ||| Sbjct 5572851 AAGGACGCCGGAGCTATCTCTGGGCTTAATGTACTGCGGATTATCAATGAACCGACTGCA 5572792 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAA---AAGAA-ACAGAAGaaaaaaaTATTTT 451488 || ||| |||| || || || ||| || | | ||| || | || | || |||| Sbjct 5572791 GCAGCTATAGCTTACGGTCT-GGATAAGAAGGGCACGAAGACTGGTGAGAGGAACGTTTT 5572733 Query 451489 AGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGT 451548 | || ||| | || || ||||| |||| ||| | | | |||||||| || || Sbjct 5572732 GATTTTCGATCTCGGGGGTGGAACCTTTGATGTTTCGCTCTTGACGATTGAAGAAGGCGT 5572673 Query 451549 ATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||||||| || || ||| ||| ||||||||||| ||||||||||| |||| || Sbjct 5572672 TTTTGAAGTGAAAGCCACCGCTGGAGATACTCATCTTGGAGGTGAAGACTTTGACAA 5572616 Score = 89.7 bits (98), Expect = 2e-12 Identities = 183/267 (69%), Gaps = 14/267 (5%) Strand=Plus/Minus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || ||||| |||||||| || ||||||| || || ||||| ||| ||||| || | Sbjct 3000096 GCGTATTTTAATGATGCGCAGAGGCAAGCCACAAAGGATGCTGGAGCAATTGCAGGACTT 3000037 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 || || |||| || || ||||| || |||| || || |||| ||||| ||| ||| Sbjct 3000036 AACGTGGTTCGTATAATCAATGAGCCAACAGGTGCAGCCATAGCTTATGGTTTAGACAAA 2999977 Query 451460 TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAAC--TC-AT 451516 |||| | || ||| ||| | |||| |||| ||||||||||||| || || Sbjct 2999976 ---AAAGGT---GGGGAGTCAAACATTCTCGTATATGATCTTGGTGGAGGAACATTCGAT 2999923 Query 451517 GATA-CTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGA 451575 | || | || ||| | || || |||| || |||||||| | || | ||| || Sbjct 2999922 GTTAGCATC----CTTACTATAGACAATGGAGTCTTTGAAGTCCTATCCACAAGTGGAGA 2999867 Query 451576 TACTCATCTAGGAGGTGAAGATATTGA 451602 ||||| || || || |||||| |||| Sbjct 2999866 CACTCACCTCGGTGGAGAAGATTTTGA 2999840 >seq6 Length=16577294 Score = 140 bits (154), Expect = 1e-27 Identities = 274/402 (68%), Gaps = 11/402 (3%) Strand=Plus/Minus Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || || || || |||||| ||| || ||| |||| || || || || ||||||||| Sbjct 494557 GTCAACTACAAGGGTGAAGAGAAACAGTTCGCTGCTGAGGAGATCTCTTCCATGGTTCTT 494498 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGT-TCTCCAGTTACTGATGCAGTAAT 451329 | ||| ||| || | || || || ||||| |||| | | | | || || | Sbjct 494497 ATTAAGATGCGTGAGATCGCTGAGGCCTACCTTGGTGTCTCTA-TCAAGAACGCCGTTGT 494439 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 |||||||| || || ||||| || | || || ||||| || || ||||| ||| ||| Sbjct 494438 CACTGTTCCTGCCTACTTCAACGACTCTCAGCGTCAAGCCACAAAGGATGCTGGAGTTAT 494379 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||||| || ||| | |||| || ||||| || ||||| || ||| | || || || Sbjct 494378 TGCTGGTTTGAACGTTATGAGAATCATCAATGAGCCCACAGCCGCAGCTATTGCCTACGG 494319 Query 451450 ACTAGGAAAATCAAAAGAAACA------GAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 || | || ||| | |||| | ||| || || || | | || ||| |||| Sbjct 494318 TCTTGACAA---AAAGGCAACAAGCGTTGGAGAGAAGAACGTTCTTATCTTCGATCTTGG 494262 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563 ||| || ||| |||| ||| | ||| | |||||||| || | ||||| || ||||| Sbjct 494261 TGGTGGTACTTTTGATGTCTCTCTTCTTACCATTGAAGAGGGTATCTTTGAGGTCAAGGC 494202 Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| |||||| || ||||| || || |||||| | || || Sbjct 494201 AACAGCTGGTGACACCCATCTTGGTGGGGAAGATTTCGACAA 494160 Score = 123 bits (136), Expect = 1e-22 Identities = 196/280 (70%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || ||||| |||||||| | || || ||||| || || ||||| || || Sbjct 490683 ACTGTCCCTGCTTACTTCAATGACTCTCAGCGTCAAGCTACAAAGGATGCTGGTGTCATC 490624 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||||| |||||||| || || || || || || || || |||||| | || || || Sbjct 490623 GCTGGTTTGAATGTTCTGCGTATCATCAACGAGCCGACCGCTGCTGCTATTGCCTACGGT 490564 Query 451451 CTAGGAAAATCAAAAGAAACAGA-----AGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 || | || || || ||| ||| || || | || | |||||| |||||| Sbjct 490563 CTCGACAAG--AAGGCAACCAGCGTTGGAGAGAAGAACGTGTTGATCTTTGATCTTGGTG 490506 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 | || ||| |||| |||| | ||| | |||||||| || | || || || ||||| | Sbjct 490505 GTGGTACTTTTGATGTTTCTCTTCTTACTATTGAAGAAGGTATCTTCGAGGTCAAGGCTA 490446 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | ||| ||||||||||| || ||||| ||| | ||||| Sbjct 490445 CTGCTGGAGATACTCATCTTGGTGGTGAGGATTTCGATAA 490406 Score = 123 bits (136), Expect = 1e-22 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || ||||| || ||||||||| | || || || ||| Sbjct 2563292 ATGCAGATCTTCGTCAAAACCCTTACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCT 2563233 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | ||| ||||||||||||||||| ||||| || || || || Sbjct 2563232 GACACCATCGACAATGTCAAAGCTAAAATTCAAGATAAGGAGGGAATCCCACCAGACCAG 2563173 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || ||| | || || ||||||||||| || || |||||||| || ||||| Sbjct 2563172 CAGAGATTGATCTTCGCTGGAAAGCAACTTGAAGACGGCAGGACTTTGGCTGACTATAAC 2563113 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | |||||||| Sbjct 2563112 ATCCAGAAGGAGTCTACACTTCA 2563090 Score = 122 bits (134), Expect = 3e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| |||||||| |||||||| || || |||||||| || || ||| Sbjct 6991108 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 6991049 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | |||| ||| || || || |||||||| |||||||| || || Sbjct 6991048 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 6990989 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || ||| | || ||||| ||||||||||| | || ||||| ||||| || Sbjct 6990988 CAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACAAC 6990929 Query 391230 AT 391231 || Sbjct 6990928 AT 6990927 Score = 93.3 bits (102), Expect = 2e-13 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 451989 TAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTT 452048 |||| || ||||| |||||||||||||||||||| || || | ||||||||| | ||| Sbjct 493776 TAAACCCCGATGAGGCTGTTGCATATGGTGCTGCCGTCCAGGGAGCTATTCTCAGTGGTG 493717 Query 452049 CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAG 452108 || | || || | |||| ||||||| | ||||| || ||||| || ||||| Sbjct 493716 AAGGAAACGAGAAGGTTCAAGATCTTCTGTTGCTCGATGTCACTCCTCTCTCCCTTGGTT 493657 Query 452109 TTGAAACAGCTGGTGGAATGATGACTAATTTAAT 452142 | ||||| || ||||| | ||||| | ||| || Sbjct 493656 TGGAAACTGCCGGTGGTGTCATGACCACTTTGAT 493623 Score = 87.8 bits (96), Expect = 7e-12 Identities = 171/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----G 451951 |||| |||| ||||| || |||||||| || || || ||| ||||| | | | | Sbjct 490115 ATGAGGTTGTCCTTGTCGGTGGTTCTACCCGTATCCCCAAAGTTCAACAGCTTCTCCAAG 490056 Query 451952 TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011 ||||| | || || | || || ||| | || |||||||| ||||||||| Sbjct 490055 ATTTCTTCAAT----GGCAAGGAGCTCTGCAAGTCTATCAACCCTGATGAGGCTGTTGCA 490000 Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGAT 452071 || ||||| || ||||| || || ||||||| ||| || | ||||| | ||| Sbjct 489999 TACGGTGCAGCTGTTCAGGCTGCAATTCTAAGCGGTGAAGGAAACGAAAAGGTTCAAGAC 489940 Query 452072 ATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATG 452131 |||| || | ||||| || ||||| || || || |||| || |||||||| | ||| Sbjct 489939 CTTCTCTTGCTTGATGTCACCCCTCTCTCCCTCGGTCTTGAGACTGCTGGTGGTGTCATG 489880 Query 452132 ACTAATTTAATT 452143 || | ||| ||| Sbjct 489879 ACCACTTTGATT 489868 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || || ||||| || | || || || ||| Sbjct 14990841 ATGCAGATCTTTGTCAAGACCTTGACCGGGAAGACTATCACCTTGGAGGTGGAGAGTTCT 14990900 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || || ||||||||||| |||||||| || || Sbjct 14990901 GACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCAGACCAG 14990960 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || ||||| ||||| ||||| | || ||||| || || || Sbjct 14990961 CAGCGTCTCATCTTCGCTGGAAAACAGCTTGAGGATGGTCGCACCTTGGCTGACTACAAC 14991020 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || |||||||| || |||| || Sbjct 14991021 ATCCAGAAGGAGTCGACCCTTCACTTGGTGCTAAGGCT 14991058 >seq2 Length=14066726 Score = 138 bits (152), Expect = 4e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| |||||||| ||||| || || ||||||||||| || || ||| Sbjct 7053833 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTCT 7053774 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | |||| ||| ||||| || |||||||| || ||||| ||||| Sbjct 7053773 GACACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCAG 7053714 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || || | || ||||| ||||| |||||| | || ||||||||||| ||| Sbjct 7053713 CAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTACAAT 7053654 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| |||| || ||||| || Sbjct 7053653 ATACAGAAGGAATCAACTCTCCACTTGGT 7053625 >seq8 Length=13324298 Score = 122 bits (134), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 17/204 (8%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || ||| | || || |||||||| || ||||| ||||||||| ||||| || || ||| Sbjct 6185451 GTAACTAAAGCGGTCATTACTGTGCCTGCTTACTTCAATGATTCACAAAGGACGGCTACT 6185510 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| |||| ||||||||| || | |||||||| ||||| ||||| ||||| || Sbjct 6185511 AAAGATGCTGGACGTATTGCTGGATTGGAAGTTCTTCGTATTATCAATGAGCCTACTGCT 6185570 Query 451433 GCTGCTCTAGCATATGGACT----AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTT 451488 ||| || | || ||||| | ||||||| | || ||||| |||| | Sbjct 6185571 GCTTCTTTGGCTTATGGGTTCGAGAGGAAAAGC-AATGAAAC------------TATTCT 6185617 Query 451489 AGTATTTGATTTTGGTGGAGGAAC 451512 ||| |||||| ||||||| || || Sbjct 6185618 AGTCTTTGATCTTGGTGGTGGTAC 6185641 >seq7 Length=17303919 Score = 116 bits (128), Expect = 1e-20 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || || || || || || |||||||| |||||| ||| Sbjct 14232787 ATGCAGATCTTTGTTAAGACTCTTACCGGGAAGACCATAACTCTTGAGGTTGAAAGCTCT 14232728 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || || |||||||||||||| ||| |||| || || Sbjct 14232727 GACACGATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTACTCCGGACCAG 14232668 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || |||| || |||||||||||||| | || ||||| || || ||| Sbjct 14232667 CAGAGGCTTATCTTTGCAGGCAAGCAACTTGAAGATGGTCGTACATTGGCTGACTACAAT 14232608 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| |||| || ||||| || | || ||||||| Sbjct 14232607 ATTCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTGAGAGG 14232564 Score = 113 bits (124), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || ||||| || || || | |||||| |||||| || Sbjct 14232331 ATGCAAATCTTTGTTAAGACTCTAACTGGCAAGACCATAATTCTTGAAGTTGAAAGCTCC 14232272 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTG-ATCA 391168 || | |||||| | | || || || ||||| ||||||||||| ||| ||| | || Sbjct 14232271 GACACCATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAAT-CCTACTGGACCA 14232213 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || | | ||||| |||||||| ||||| | |||||||||||||| || Sbjct 14232212 GCAGAGACTTATCTATGCGGGGAAGCAACTTGAGGATGGCCGTACTTTGGCGGATTACAA 14232153 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 |||| | ||||| |||| || ||||| || | || |||||||| Sbjct 14232152 TATTCAGAAGGAGTCAACTCTACACTTGGTTCTTAGGTTGAGAGGA 14232107 Score = 105 bits (116), Expect = 3e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || || |||||||| ||||| || ||| || |||| | | || | || Sbjct 796138 GTCCTCACCAAAATGAAGGAAACTGCCGAAGCTTACCTTGGGAAATCTATCACCAAAGCT 796197 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||| ||||| ||||||||||||||||| || || ||||| || || ||||| || Sbjct 796198 GTTGTTACCGTTCCAGCTTATTTCAATGATGCTCAGCGACAAGCCACAAAGGATGCTGGG 796257 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | ||||||||| | |||| | | || || || ||||||||||| ||||| ||| || Sbjct 796258 AAAATTGCTGGTCTTGATGTCCAGAGGATCATCAACGAACCTACAGCTGCTGCACTATCA 796317 Query 451445 TATGGACTAGGAAAATCAAA 451464 ||||| || ||| | |||| Sbjct 796318 TATGG--TATGAACAGCAAA 796335 Score = 104 bits (114), Expect = 9e-17 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || ||||||||||| || || | || ||||| ||||||||| | ||||| | || Sbjct 15174797 ATAGGGATTGATCTTGGTACAACTTACTCTTGTGTTGGTGTTTACAAGAATGGTCACGTT 15174856 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 |||||||| || || ||||||||| || | ||||||||| ||||| ||||||| || Sbjct 15174857 GAAATTATTGCCAACGACCAAGGAAACCGTATTACTCCTTCCTGGGTTGGTTTTACTGAC 15174916 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTA--AATCAA 451070 || || || || | || | ||||||| |||||| Sbjct 15174917 TCTGAGAGGCTCATTGGTGAGGCTGCTAAGAATCAA 15174952 Score = 104 bits (114), Expect = 9e-17 Identities = 175/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 ||||||||||| ||||| ||| |||| || || || ||||| || ||||||||| | Sbjct 15184984 GCTTATTTCAACGATGCCCAAAGGCAGGCTACGAAGGATGCTGGTGTTATTGCTGGGCTT 15185043 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 |||||| | |||| || || |||||||| || |||||| | || ||||| || | | Sbjct 15185044 AATGTTGCTAGAATCATCAACGAACCTACTGCTGCTGCTATTGCCTATGGTCTGG----A 15185099 Query 451460 TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGAT 451519 | ||||| | || || || || | || |||||| ||||||| || || |||| Sbjct 15185100 TAAAAAG--GGTGGTGAGAAGAACATCCTTGTCTTTGATCTTGGTGGTGGTACCTTTGAT 15185157 Query 451520 ACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACT 451579 |||| | | ||||| | || || ||||| || |||| |||||||| ||| Sbjct 15185158 GTCAGTGTATTGACCATTGATAACGGAGTGTTTGAGGTTCTCTCAACAAATGGTGACACT 15185217 Query 451580 CATCTAGGAGGT 451591 || | |||||| Sbjct 15185218 CACTTGGGAGGT 15185229 Score = 102 bits (112), Expect = 3e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || ||||||||||| || || | || ||||| ||||||||| | ||||| | || Sbjct 15184369 ATAGGGATTGATCTTGGTACAACTTACTCTTGTGTTGGTGTTTACAAGAATGGTCACGTT 15184428 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 |||||||| || || ||||||||| || | ||||||||| ||||| ||||||| || Sbjct 15184429 GAAATTATTGCCAACGACCAAGGAAACCGTATTACTCCTTCCTGGGTTGGTTTTACTGAC 15184488 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || || || || | || | |||||||| Sbjct 15184489 TCTGAGAGGCTCATTGGTGAGGCTGCTAA 15184517 Score = 96.9 bits (106), Expect = 1e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || || || || || || |||||||| || ||| ||| Sbjct 14232103 ATGCAAATCTTTGTTAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAAAGTTCT 14232044 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || || |||||||||||||| || |||| || || Sbjct 14232043 GACACGATTGACAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCACTCCGGACCAG 14231984 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | ||||| |||| |||||||| || || || | |||||||| ||||| || Sbjct 14231983 CAGAGACTTATTTTTGCAGGTAAACAACTCGAGGACGGTCGTACTTTGGCTGATTACAAC 14231924 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||| ||||| Sbjct 14231923 ATCCAGAAGGAGTCAACCCTTCA 14231901 Score = 95.1 bits (104), Expect = 5e-14 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || ||||| || || || ||||| |||| ||| || ||||| ||||| Sbjct 14232554 AATATTT--GTGAAAACTCTCACCGGCAAAACCATTATTCTAGAAGTTGAGAGCTCTGAC 14232497 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | |||||| | | || || || ||||| |||| |||||| | || || || ||| Sbjct 14232496 ACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGTAGGAATCCTACCGGACCAGCAA 14232437 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 | | || | || || ||||| || ||||| |||| | || ||||| |||||| Sbjct 14232436 AGACTTATCCATGCGGGCAAGCAACTCGAGGATGGTCGAACCCTTGCTGATTACAATATT 14232377 Query 391233 GATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 | ||||| ||||||||||||| || | || ||||||| Sbjct 14232376 CAGAAGGAGTCAACACTTCACTTGGTTCTTAGGTTGAGAGG 14232336 Score = 91.5 bits (100), Expect = 6e-13 Identities = 153/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || ||||| ||||| || |||| || |||||| |||||||| Sbjct 6237520 GCTGTCATCACTGTGCCTGCTTACTTCAACGACTCACAGAGGACAGCAACAAAAGATGCT 6237461 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | ||||||||||| | |||||||| ||||| || || || ||||| ||| | | Sbjct 6237460 GGTCGAATTGCTGGTTTGGAAGTTCTTCGTATTATCAACGAGCCCACAGCTGCTTCATTG 6237401 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| | | | ||||| || | | ||| || |||| |||||| || Sbjct 6237400 GCTTATGGGTTTG--------ACAGAAAAAGCA-ATGAAACAATCCTAGTCTTTGATCTT 6237350 Query 451502 GGTGGAGGAACTCATGATACTTC-TGTACTTTCAATTGAA 451540 ||||| || || |||| ||| |||||| |||||| Sbjct 6237349 GGTGGTGGTACCTTTGATGTTTCAGGTACTTGGCATTGAA 6237310 >seq4 Length=14994381 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || || || || || || || || || |||||| Sbjct 14616598 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTAGAGTCATCT 14616657 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || || || ||||||||||| || || || || Sbjct 14616658 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCGGACCAG 14616717 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || |||||| | || || || || || || ||| |||| || || || || || Sbjct 14616718 CAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACCTTAGCCGACTACAAC 14616777 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| |||| |||||| Sbjct 14616778 ATCCAGAAGGAGTCAACGCTTCAC 14616801 >seq3 Length=15040190 Score = 89.7 bits (98), Expect = 2e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || || ||||| ||||||||||| ||||| || || || ||||||||||| | ||| Sbjct 2932238 AACCCCGATGAGGCTGTTGCATACGGTGCAGCTGTCCAGGCAGCTATTCTTAGCGGTGAG 2932179 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | | | || || | |||| | || || | ||||| ||||| || ||||| || || Sbjct 2932178 GGTAACGAGAAGGTTCAAGATCTCCTCTTGCTCGATGTCACACCACTTTCTCTCGGTCTT 2932119 Query 452111 GAAACAGCTGGTGGAATGATGACT 452134 ||||||||||| ||| | |||||| Sbjct 2932118 GAAACAGCTGGAGGAGTCATGACT 2932095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975698832361484