Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 132 6e-26 seq4 125 9e-24 seq8 118 1e-21 seq1 109 7e-19 >seq5 Length=13709650 Score = 132 bits (146), Expect = 6e-26 Identities = 395/602 (66%), Gaps = 18/602 (3%) Strand=Plus/Minus Query 101721 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 101780 || || || ||| |||| || | | ||||||| | ||||||| | | || ||||| Sbjct 2138800 GAGCCGCTTCTAACCCCAACCCCAGACAGATTCTGTATGTTCCCAATCCACTACCCACAG 2138741 Query 101781 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 101839 ||||||| | || ||||| || | || | | ||||| |||||||| |||||||| Sbjct 2138740 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCCTTCTGGACCGCTGAAGAAGTAGATCT 2138682 Query 101840 CTCAAAGGATTTGGACGATTGGAAGAC---TCTAAATGAAAATGAAAAGAAATTCATAAA 101896 |||| | || ||||||| ||| ||| || || ||| | ||||| || Sbjct 2138681 CTCACAAGACAACCGCGATTGGGAGAACAGTCTCAACGACGGCGAACGTCACTTCATCAA 2138622 Query 101897 ATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAA 101956 | || |||| || ||||| |||| ||||| ||||| ||||| |||||| || | Sbjct 2138621 ACACGTCCTCGCTTTCTTCGCTGCATCCGACGGAATCGTTTTAGAGAATCTCGCTT---- 2138566 Query 101957 CTTTGCTGATG----AGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTC 102012 || | | ||| | || ||| ||| || ||| | ||||||| | || || | || Sbjct 2138565 CTCGGTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGCTTTCTACG-GTTTCCAGATC 2138507 Query 102013 ATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGAT 102071 || || | | ||| |||| || ||| || | || | || || || ||| Sbjct 2138506 GCGATTGAGAATATTCATTCTGAGATGTATAGTCTTCTTCTCGATACTTACATCAAAGAT 2138447 Query 102072 GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAA 102131 |||| | || ||||| || || | || |||| || | |||||| Sbjct 2138446 AACAAAGAGAGAGACCATCTCTTCCGCGCGATTGAGACGATTCCTTGCGTCGCGAAGAAA 2138387 Query 102132 GCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTC 102191 || | ||||| ||||| ||| | || | || | |||||||||| ||| || | Sbjct 2138386 GCTCAGTGGGCGATGAAATGGATCGACGGA---TCTCAGACCTTTGCTGAACGAATCGTT 2138330 Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || || || |||||||| |||||||||||||| || ||||||| | || | ||||| Sbjct 2138329 GCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTT 2138270 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 ||||| ||||| |||||||| || | ||||| ||||| | |||||||| ||||| Sbjct 2138269 AAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCGAGACGAA 2138210 Query 102312 GG 102313 || Sbjct 2138209 GG 2138208 >seq4 Length=14994381 Score = 125 bits (138), Expect = 9e-24 Identities = 303/450 (67%), Gaps = 14/450 (3%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || ||||| | | | || |||||| || || | | ||| ||||| Sbjct 7884121 CGATCAAACCGTCCTGGCCTCAACAAAGCAGAATCAAGAATGTCTGCTCTATTGGTTGCA 7884062 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | || ||| |||| | || |||||||||||||||| || | ||||| | Sbjct 7884061 GCAACTACGATAACACCAGTGTTACCTT--CAAAACCATCCATCTCAGTTAGGAGCTGAT 7884004 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTC 16059 | | || ||||| | ||||||||| || |||| || | | | |||| | | Sbjct 7884003 TGAGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTCCCTCTTTGCCTGC 7883947 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCA 16118 | || ||||| || ||||| | ||||| ||||| || ||| || || ||| | Sbjct 7883946 CGACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCATTCTCCTTGGCTTTCTTGA 7883887 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || || | ||| || ||||| ||||||||||| ||||| | | | Sbjct 7883886 AA-AGATCACGGACTCTTGAGGCACCGACACCGACAAACATCTCAACAAACTCAGAACCA 7883828 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | || ||| || ||| || |||||| ||||||||| || | ||| || || Sbjct 7883827 G-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTTT 7883769 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297 || ||||| || ||| ||||| ||||| || |||||||| ||| || Sbjct 7883768 CCCGGTACCAGGAGGACCAATCAGGAGAACACCTTTGGGGATCTTGGCACCAACCGCAGT 7883709 Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | ||||||| |||| ||| ||||| ||||| Sbjct 7883708 GAATCTCTCGGGTTTCTTCAGAAACTCCAC 7883679 >seq8 Length=13324298 Score = 118 bits (130), Expect = 1e-21 Identities = 200/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||||||||| ||||| || ||||||| |||||||| | Sbjct 3556070 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--A 3556127 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | |||| | || || ||||||||||||||||| || || ||| Sbjct 3556128 CCTCCCATCCCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCAATAAACACAATG 3556187 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || || ||||| | ||||| || || || | || ||||| Sbjct 3556188 CAAGG--AGCTTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCCAC 3556243 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||| ||||| | | || | ||| | ||| || || || ||| Sbjct 3556244 ACCAACAAAAAGCTCAACAAACTCCGAAGCAGCACAAGAAAAGAACGGCACTCCAGCTTC 3556303 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||| |||||||| || Sbjct 3556304 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 3556345 >seq1 Length=19566579 Score = 109 bits (120), Expect = 7e-19 Identities = 302/454 (67%), Gaps = 22/454 (5%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || || || || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 2023566 CGGTCGAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2023625 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| || ||| || |||| ||||||||||||||||| |||| |||||| Sbjct 2023626 GCAACTACAATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGAAGCTGA 2023682 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| || ||||| | ||||||||| || |||| || | | | |||| | Sbjct 2023683 TTAAGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTA 2023739 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| | || || ||||| || ||| || || || Sbjct 2023740 CCAACAGCATCTATTTCATCCACAAAAACTATGCACGGAGCATTCTCTTTTGCTTTTTTG 2023799 Query 16119 AAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || ||||| || || |||| || || ||||||||||||||||| ||||| | | Sbjct 2023800 AAAAGATCACG--GACCCTTGATGCACCAACACCAACAAACATCTCAACAAACTCAGAAC 2023857 Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | | | || | | |||||| ||| || |||||| ||||| ||| || | || || Sbjct 2023858 CCG-AGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAACAGGGTT 2023916 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 ||||| ||||| || ||| ||||| |||| || ||| ||| ||| || Sbjct 2023917 TTACCAGTACCAGGAGGACCTATAAGGAGAACACCCTTGGGGATCCGGGCTCCA--ACCG 2023974 Query 16296 AAGT--ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| | |||||||| | ||| ||||| ||||| Sbjct 2023975 CAGTAAACCTCTCAGGCTTCTTCAGAAACTCCAC 2024008 Score = 107 bits (118), Expect = 2e-18 Identities = 198/283 (70%), Gaps = 12/283 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| | ||| ||||| || ||||| | |||||||| || Sbjct 17296151 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 17296208 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || || Sbjct 17296209 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 17296268 Query 16092 CATGGTTGATTTTCG--CGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || | ||||| ||| || || | ||||| || || || | || ||||| Sbjct 17296269 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCCAC 17296324 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| || || | ||||||||| | || ||| | || || ||| || || | ||| Sbjct 17296325 ACCCACGAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCTTC 17296384 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 || || | || | ||| | || |||||||||||||| ||| Sbjct 17296385 CCCAGCTACAGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGC 17296427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736402076560