Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5 109 6e-19 >seq5 Length=13709650 Score = 109 bits (120), Expect = 6e-19 Identities = 134/178 (75%), Gaps = 10/178 (6%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGAGTCCTCT 119569 ||||| || |||||||| | || || ||| ||||| |||||||||||||||| Sbjct 2138208 CCTTCGTCTCGAGAGATCAATTCGTT--TGAG--AAAGTTAACCCAGGCATGAGTCCTCG 2138263 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 |||||| ||||| ||||||| || || ||||| || |||||||| || || ||||| || Sbjct 2138264 TTTCTTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGC 2138323 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGTC-GAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||| | | || ||||| ||||||| |||| ||||| ||| || | ||||| Sbjct 2138324 GAAAGCAACGATTCGTTCAGC-AAAGGTCTGAGATCCGTCGATCCATTTCATCGCCCA 2138380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970309019400