Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 seq1 118 1e-21 seq8 113 5e-20 seq5 96.9 4e-15 >seq4 Length=14994381 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| || ||||| | | | || |||||| || || | | ||| || || Sbjct 7884121 CGATCAAACCGTCCTGGCCTCAACAAAGCAGAATCAAGAATGTCTGCTCTATTGGTTGCA 7884062 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| || | || || || Sbjct 7884061 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCAGTTAGGAGCTGATTG 7884002 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 7884001 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCGGTCCCTCTTTGCCTGCCG 7883945 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | |||||||| || || ||| || ||| | | || Sbjct 7883944 ACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA 7883885 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || || ||| ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 7883884 AGATCACGGACTCTTGAGGCACCGACACCGACAAACATCTCAACAAACTCAGAACCAG-A 7883826 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | || ||| || ||| || |||||| ||||||||| || | ||| || || || Sbjct 7883825 GATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTTTCCC 7883766 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| ||||| |||| || |||||||| ||| || | | Sbjct 7883765 GGTACCAGGAGGACCAATCAGGAGAACACCTTTGGGGATCTTGGCACCAACCGCAGTGAA 7883706 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||| |||| ||| ||||| ||||| Sbjct 7883705 TCTCTCGGGTTTCTTCAGAAACTCCAC 7883679 >seq1 Length=19566579 Score = 118 bits (130), Expect = 1e-21 Identities = 299/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || || || || ||||| | || | ||| ||||| || || | | || || || Sbjct 2023566 CGGTCGAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2023625 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| || ||| || | | ||||||||||||||||| |||| ||| || ||| Sbjct 2023626 GCAACTACAATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTA 2023685 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 2023686 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTACCA 2023742 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | || || || || || ||| || || ||| || Sbjct 2023743 ACAGCATCTATTTCATCCACAAAAACTATGCACGGAGCATTCTCTTTTGCTTTTTTGAAA 2023802 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || |||||| || || ||||||||||||||||| ||||| | | | | | Sbjct 2023803 AGATCACGGACCCTTGATGCACCAACACCAACAAACATCTCAACAAACTCAGAACCCG-A 2023861 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| || |||||| ||||| ||| || | || || ||||| Sbjct 2023862 GATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAACAGGGTTTTACC 2023921 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT- 9606 ||||| || ||| ||||| ||||| || ||| ||| ||| || ||| Sbjct 2023922 AGTACCAGGAGGACCTATAAGGAGAACACCCTTGGGGATCCGGGCTCCA--ACCGCAGTA 2023979 Query 9607 -ATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 | |||||||| | ||| ||||| ||||| Sbjct 2023980 AACCTCTCAGGCTTCTTCAGAAACTCCAC 2024008 Score = 116 bits (128), Expect = 4e-21 Identities = 254/374 (68%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| | || ||||| || ||||| | |||||||| || Sbjct 17296151 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 17296208 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||| Sbjct 17296209 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 17296268 Query 9399 CATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || || | ||||| || | || || | ||| | ||| || || ||||||| Sbjct 17296269 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACAC 17296326 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | || || | ||||||||| | || ||| | || || ||| || || | ||| | Sbjct 17296327 CCACGAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCTTCCC 17296386 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9576 | || | || | ||| | || |||||||||||||| ||| || | || | ||| Sbjct 17296387 CAGCTACAGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGCGGTCCAACAAGCA-AACAC 17296445 Query 9577 CCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 || | ||||||||||| || | ||| | ||||| | ||| | ||||||||| Sbjct 17296446 CCTTTAGGAATCTTGGCACCCAAGGCTGTGTACTTATCAGGATTCTTCAAGAAATCCACA 17296505 Query 9636 ATCTCTTCCAATTC 9649 | || | ||||| Sbjct 17296506 ACTTCCTGTAATTC 17296519 >seq8 Length=13324298 Score = 113 bits (124), Expect = 5e-20 Identities = 195/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| |||||||| || ||||| || ||||||| |||||||| | Sbjct 3556070 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--A 3556127 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | |||| | || || ||||||||||||||||| || ||||| Sbjct 3556128 CCTCCCATCCCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCAATAAACACAATG 3556187 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | ||||| | ||| | ||| || || |||||||| Sbjct 3556188 CAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACACC 3556246 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 |||||| | ||| ||||| | | || | ||| | ||| || || || ||| || Sbjct 3556247 AACAAAAAGCTCAACAAACTCCGAAGCAGCACAAGAAAAGAACGGCACTCCAGCTTCTCC 3556306 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || | |||| || | ||| ||||| |||||||| || Sbjct 3556307 AGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 3556345 >seq5 Length=13709650 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || | ||| |||||||| || || |||||||| || || ||| Sbjct 2138208 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 2138267 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | |||||| ||||||||||||||||| || ||||| || || Sbjct 2138268 TTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 2138327 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 |||| | || || || |||| |||| | ||| | ||||||||| ||||| | Sbjct 2138328 GCAACGATTCGTTCAGCAAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 2138384 Query 117472 GCCTTCTTC 117480 || |||||| Sbjct 2138385 GCTTTCTTC 2138393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975099310520