Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_015225.1 Length=35499 Score E Sequences producing significant alignments: (Bits) Value seq1 80.6 6e-11 >seq1 Length=19566579 Score = 80.6 bits (88), Expect = 6e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 17426 CAGCAGAAGGTGGTAGACGGCCTGGCCTCGGGCATCAACGGGGTGGTAGACCTGGCCTCG 17485 || || ||||||||||| ||||||||||| ||||| | ||||||||| ||||||||| Sbjct 3968811 CAACAAAAGGTGGTAGATGGCCTGGCCTCTGGCATTAGCGGGGTGGTGGACCTGGCCAAC 3968870 Query 17486 CAGGCCGTGCAGAA 17499 ||||| ||||| || Sbjct 3968871 CAGGCAGTGCAAAA 3968884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113474158368586