Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq6 239 5e-58 seq7 134 2e-26 seq4 116 4e-21 >seq6 Length=16577294 Score = 239 bits (264), Expect = 5e-58 Identities = 432/632 (68%), Gaps = 0/632 (0%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || || || || || |||| ||||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 1968746 CTATTGCTCTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1968687 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | ||| || ||| | || || || || || || Sbjct 1968686 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 1968627 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || |||||||| || |||| | | | ||| | | |||| || ||||| Sbjct 1968626 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 1968567 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || ||| | ||| ||||| Sbjct 1968566 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTT 1968507 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | || || | || | | | |||||||| ||| | | || ||||| | || || Sbjct 1968506 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGA 1968447 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 1968446 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTT 1968387 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 |||| || || |||||||||||||| |||||||||| || || || ||| Sbjct 1968386 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 1968327 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || || || || ||||| | || | || | ||||| || || || |||||||| Sbjct 1968326 GTAGCGGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 1968267 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| || || || |||| || | || | |||| || |||||| Sbjct 1968266 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 1968207 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGA 171160 ||||| || || | || || || | |||||| Sbjct 1968206 GGTGCTACTGTAGAAAATACTTTATTTGAAGA 1968175 >seq7 Length=17303919 Score = 134 bits (148), Expect = 2e-26 Identities = 154/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||||||| |||| ||||| ||||| ||||||||||| || ||||| || || || Sbjct 2779060 CAAAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCCGCGTTCTTGGCTACTTCA 2779119 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| || || || ||| | | || ||| |||||| | || Sbjct 2779120 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATCGGTGTTAGT--GTAGATTCTTCAG 2779177 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || |||| | | || | ||||||||||| |||||||| ||||| ||||||| Sbjct 2779178 GAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 2779237 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | || || |||||||| || ||||| Sbjct 2779238 CCACTAGCAACATCTGTACTGCTCA 2779262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 153252 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATA 153311 || ||| || | ||||| || ||||||||| |||||||| |||||||||||||| Sbjct 2778547 CGTAACATTATGGAGAACCCAGCTTGGTACACTCAGTACACTCCTTATCAAGCTGAGATC 2778606 Query 153312 TCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGA 153371 |||||||| | | ||| | | |||||| ||| ||| ||||||| || || || || Sbjct 2778607 TCTCAGGGTCGTCTCGAATCGCTGCTCAATTTCCAGACGGTCATCACCGACCTCACGGGG 2778666 Query 153372 TTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | || || | ||||| || || | ||||||| ||||| || || || || ||| Sbjct 2778667 CTTCCCATGTCGAACGCTTCGCTCCTCGATGAAGGGACTGCGGCTGCCGAGGCTATG 2778723 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| |||||||| || | || || || ||||||||||| ||||||||||| Sbjct 2781014 TGGAGCCGATGTGTGTCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 2781073 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 |||||||| | ||||| || ||||| |||||| | |||||||| Sbjct 2781074 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 2781122 >seq4 Length=14994381 Score = 116 bits (128), Expect = 4e-21 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGG-TAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 ||||||| ||| || | | | || ||||||||| | || ||||| || || |||||||| Sbjct 2877628 GATATTGTTGTTGGATCGGCT-CAGAGGTTTGGTGTACCGATGGGTTACGGTGGTCCTCA 2877570 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG- 153864 |||||| ||||| || || || | |||||||||| | ||| ||||| || ||| | | Sbjct 2877569 TGCTGCTTTCTTGGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGG 2877510 Query 153865 -GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923 || ||| || ||| | || || |||| | | | || | |||||||| || Sbjct 2877509 TGTTAGT--GTTGATTCTTTGGGAAAACAAGCTTTGCGTATGGCTATGCAGACTAGGGAA 2877452 Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 ||||||||| | || || ||||| ||||| |||||||| || ||||||| Sbjct 2877451 CAGCATATCCGCAGGGATAAAGCTACCAGCAACATCTGTACTGCTCAGG 2877403 Score = 109 bits (120), Expect = 6e-19 Identities = 127/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| ||||||| || || ||||| |||||||||||||| ||||| ||||| Sbjct 2878108 GAGAATCCTGGTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATTTCTCAAGGAAGG 2878049 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | || |||| | |||| ||| ||| | || || || ||||| || ||||| || | Sbjct 2878048 CTTGAGTCTTTGCTTAATTTCCAGACGGTTATTACTGATCTTACTGGTTTACCTATGTCG 2877989 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTAT 153432 ||||| || | | ||||||| || ||||| || |||||||| ||||| Sbjct 2877988 AACGCTTCGTTGCTCGATGAAGGTACCGCAGCTGCGGAAGCAATGGCTAT 2877939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207203356320