Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq6 370 1e-97 >seq6 Length=16577294 Score = 370 bits (410), Expect = 1e-97 Identities = 517/721 (72%), Gaps = 8/721 (1%) Strand=Plus/Minus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | |||||||| || || | |||||||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 169367 CTACTTCTTCTTCCCAC-TGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTT 169425 ||| | || |||||| ||||||| | ||| | || || ||| |||| |||||| | || Sbjct 1968746 CTATTGCT-CTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTT 1968688 Query 169426 TGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTT 169482 ||| ||||| ||||| || || ||| | ||| |||| || ||||||| || || Sbjct 1968687 TGTAACTTCATGGTATACTCATGGATTGGCT---AGTTCCTATTTAGAAGGTTGCAATTT 1968631 Query 169483 CCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATG 169542 | || ||||| || ||| |||||| | | | | || || || | || || || Sbjct 1968630 TTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTG 1968571 Query 169543 GGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTT 169602 |||||| ||||||||||| ||||| ||| ||||||||||| |||||||| ||| || Sbjct 1968570 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTT 1968511 Query 169603 TGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGC 169662 ||| || || || || || || ||||| || ||||| ||| | | ||||||||| | || Sbjct 1968510 TGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGC 1968451 Query 169663 ACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATT 169722 || | || | || ||||||||||| || |||||||||||||| |||||||| || Sbjct 1968450 TCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTT 1968391 Query 169723 TGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTT 169782 ||| |||||| || || || ||||| || || || ||||||||||| || || Sbjct 1968390 TGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTT 1968331 Query 169783 TGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTT 169842 ||| ||| | || || || | ||| | | || | ||||| || || || ||||| || Sbjct 1968330 TGGTGTAGCGGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATT 1968271 Query 169843 GAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTAT 169902 ||| ||||| || |||||||| || || || | |||||| || |||| | ||||| Sbjct 1968270 GAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTAT 1968211 Query 169903 CCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAA 169962 ||||||| ||| ||||| || || || | |||||| ||||| |||||||| ||| Sbjct 1968210 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 1968151 Query 169963 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 170022 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| || Sbjct 1968150 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 1968091 Query 170023 G 170023 | Sbjct 1968090 G 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574468049148840