Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq6 414 1e-110 >seq6 Length=16577294 Score = 414 bits (458), Expect = 1e-110 Identities = 517/706 (73%), Gaps = 2/706 (0%) Strand=Plus/Minus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || || ||||||||||| ||||||||||| || | || || Sbjct 1968794 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTC 1968735 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| | ||| | || |||||| | || || || || || | || ||| Sbjct 1968734 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 1968675 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165385 |||||||| || ||||| ||||||||| | || ||| || ||| | || || |||||| Sbjct 1968674 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 1968615 Query 165386 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 165445 |||||||| || | | | | |||||| | || | || ||||||||||| || ||| Sbjct 1968614 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 1968555 Query 165446 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 165505 || ||||| | ||| ||| | || || || ||||||||||| || |||||||| Sbjct 1968554 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 1968495 Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTAT 165564 |||||||| |||| ||||| ||| | |||||||||||| | || || ||| || | | Sbjct 1968494 GCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGATCTGTTCAAT-T 1968436 Query 165565 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 165624 || || || ||||| || || ||||||||||| || |||||||||||| ||||| || Sbjct 1968435 GCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCT 1968376 Query 165625 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 165684 || || || || |||||||| ||||||| || || || ||| || || || || || Sbjct 1968375 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 1968316 Query 165685 CTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATAT 165744 || | ||| ||||||| | ||||| || ||||| ||||| ||||| || |||||||| Sbjct 1968315 ATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 1968256 Query 165745 GATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGT 165804 |||||| || || ||| | ||||| | || |||| | || || ||||||| ||| || Sbjct 1968255 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGT 1968196 Query 165805 AGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTAC 165864 ||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || | || Sbjct 1968195 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 1968136 Query 165865 TCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGG 165910 ||||| |||||||| || |||||||| || || ||||| || ||| Sbjct 1968135 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556919418714120