Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq6 248 1e-60 seq7 120 4e-22 seq4 107 2e-18 >seq6 Length=16577294 Score = 248 bits (274), Expect = 1e-60 Identities = 434/632 (69%), Gaps = 0/632 (0%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || || ||||| || | || ||||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 1968746 CTATTGCTCTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1968687 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || |||||| Sbjct 1968686 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 1968627 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || ||||| || || |||| | | | ||| | | |||| || ||||| Sbjct 1968626 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 1968567 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || || ||| ||||| Sbjct 1968566 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTT 1968507 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | || || | || | | | |||||||| ||| | ||||||||||| | || || Sbjct 1968506 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGA 1968447 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 1968446 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTT 1968387 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 |||| |||| || |||||||| || |||||||||| || ||| || ||| Sbjct 1968386 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 1968327 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || || || || ||||| | || | || | ||||| || || || |||||||| Sbjct 1968326 GTAGCGGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 1968267 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| || || || |||| || | || | ||||| || |||||| Sbjct 1968266 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 1968207 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGA 173582 ||||| || || | || || || | |||||| Sbjct 1968206 GGTGCTACTGTAGAAAATACTTTATTTGAAGA 1968175 >seq7 Length=17303919 Score = 120 bits (132), Expect = 4e-22 Identities = 152/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| || || ||||||||||| || ||||| || || || Sbjct 2779060 CAAAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCCGCGTTCTTGGCTACTTCA 2779119 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| || || || ||| | | || ||| |||||| || Sbjct 2779120 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATCGGTGTTAGT--GTAGATTCTTCAG 2779177 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | || | ||||||||||| |||||||| || || ||||||| Sbjct 2779178 GAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 2779237 Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647 | || || |||||||| || || |||| Sbjct 2779238 CCACTAGCAACATCTGTACTGCTCAAG 2779264 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 157927 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATA 157986 || ||| || | ||||| || ||||||||| |||||||| |||||||||||||| Sbjct 2778547 CGTAACATTATGGAGAACCCAGCTTGGTACACTCAGTACACTCCTTATCAAGCTGAGATC 2778606 Query 157987 TCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGA 158046 |||||||| | | ||| | | |||||| ||| ||| ||||||| || ||||| || Sbjct 2778607 TCTCAGGGTCGTCTCGAATCGCTGCTCAATTTCCAGACGGTCATCACCGACCTCACGGGG 2778666 Query 158047 CTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | ||||| || || | ||||||| ||||| || || || || ||| Sbjct 2778667 CTTCCCATGTCGAACGCTTCGCTCCTCGATGAAGGGACTGCGGCTGCCGAGGCTATG 2778723 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| |||||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 2781014 TGGAGCCGATGTGTGTCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 2781073 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 |||||||| | ||||| |||||||| |||||| | |||||||| Sbjct 2781074 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 2781122 >seq4 Length=14994381 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || ||||||||| | || ||||| ||||| |||||||||||||| ||||| || || || Sbjct 2877607 CAGAGGTTTGGTGTACCGATGGGTTACGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCA 2877548 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||| | ||| ||||| || ||| | | || ||| || ||| | Sbjct 2877547 CAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCTTTGG 2877490 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | | || | |||||||| || ||||||||| | || || |||| Sbjct 2877489 GAAAACAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAGCATATCCGCAGGGATAAAG 2877430 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | ||||| |||||||| || || || Sbjct 2877429 CTACCAGCAACATCTGTACTGCTCA 2877405 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| ||||||| || || ||||| |||||||||||||| ||||| ||||| Sbjct 2878108 GAGAATCCTGGTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATTTCTCAAGGAAGG 2878049 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | || |||| | |||| ||| ||| | || || || || || || |||| || | Sbjct 2878048 CTTGAGTCTTTGCTTAATTTCCAGACGGTTATTACTGATCTTACTGGTTTACCTATGTCG 2877989 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||||| || | | ||||||| || ||||| || ||||||||| Sbjct 2877988 AACGCTTCGTTGCTCGATGAAGGTACCGCAGCTGCGGAAGCAATG 2877944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588045517955280