Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq6 396 3e-105 >seq6 Length=16577294 Score = 396 bits (438), Expect = 3e-105 Identities = 527/723 (73%), Gaps = 12/723 (2%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 163681 TTACTACTTCTTCCCAC-TGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTT 163739 || | || |||||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 1968746 CTATTGCT-CTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTT 1968688 Query 163740 CGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCT 163799 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| | Sbjct 1968687 TGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTT 1968628 Query 163800 CACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 163858 || || || || || || |||||| | | | | |||||| || || || || |||| Sbjct 1968627 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGG 1968569 Query 163859 GTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTG 163918 ||||||| || || || ||||| || ||| ||| | || || || ||| ||||| Sbjct 1968568 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTG 1968509 Query 163919 TGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC 163978 | || |||||||| || || || | || ||||| ||| | || || ||||||||||||| Sbjct 1968508 TTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTC 1968449 Query 163979 GC-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037 | ||| || | | |||| || ||||| || || ||||||||||| |||||||| || Sbjct 1968448 GATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTT 1968390 Query 164038 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTT 164097 ||| |||||| || || || || || |||||||| |||||||||| || || |||| Sbjct 1968389 GTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 1968330 Query 164098 GGAGTGGCAGCAATCTTCAGATTC---CTCTTATTCCTTCAAGGATTTCATAACTGGACT 164154 || || || || || || ||||| ||||| |||| |||| |||||||| ||||| Sbjct 1968329 GGTGTAGCGGCTATATTTCGATTCATTCTCTTTTTCC---AAGGGTTTCATAATTGGACA 1968273 Query 164155 TTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCT 164214 |||||||| || |||||||||||||| |||||| |||| |||| || |||||| ||| Sbjct 1968272 TTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCT 1968213 Query 164215 ATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTT 164274 ||||| || | || || |||||||| || | ||||||||| || ||||| || || Sbjct 1968212 ATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 1968153 Query 164275 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 164334 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| Sbjct 1968152 CGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTT 1968093 Query 164335 TGG 164337 ||| Sbjct 1968092 TGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557578612344600