Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq6 403 2e-107 >seq6 Length=16577294 Score = 403 bits (446), Expect = 2e-107 Identities = 518/709 (73%), Gaps = 8/709 (1%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || ||||| || ||||| || |||||||| || | || ||| Sbjct 1968794 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCT-CTT 1968736 Query 183253 CCCAC-TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTG 183311 ||| ||| ||| | || | || |||||| | || || ||| | ||||| || || Sbjct 1968735 CCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATG 1968676 Query 183312 GTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGT 183371 |||||| |||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 1968675 GTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGT 1968616 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || |||||| | | | | |||||| | ||||||| ||||||||||| | || Sbjct 1968615 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACA 1968556 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 ||| || ||| || ||||| ||| | || || || ||| |||||| || |||||||| Sbjct 1968555 AGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCACGG 1968496 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 || || || | || ||||| ||| | || ||||||||||||||||| | || | Sbjct 1968495 CGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGATCTGTTCAATT 1968436 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| || || ||||||||||| |||||||||||||| ||| ||||| Sbjct 1968435 GCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCT 1968376 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || |||||||| ||||| ||| ||||||||||| |||||||| || ||||| || || Sbjct 1968375 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 1968316 Query 183672 CTTTAGATTC---CTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCA 183728 ||| ||||| || || |||| |||||||| | || ||||| || ||||| || || Sbjct 1968315 ATTTCGATTCATTCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTTCA 1968259 Query 183729 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCAC 183788 |||||||||||| |||||| |||| || | || || || | ||||| ||||||| || Sbjct 1968258 TATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTAC 1968199 Query 183789 AGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTC 183848 ||||| ||||| || | ||||||||| || ||||| |||||| || ||| | | Sbjct 1968198 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 1968139 Query 183849 CACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGG 183897 ||||||| ||||| || ||||| ||||| || || || || || ||| Sbjct 1968138 AACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611690089487400