Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq6 399 2e-106 >seq6 Length=16577294 Score = 399 bits (442), Expect = 2e-106 Identities = 505/689 (73%), Gaps = 4/689 (1%) Strand=Plus/Minus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCAC-TGCTTATCTTGC 166249 || || ||||||||||| ||||||||||| || | || |||||| ||| ||| | || Sbjct 1968776 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCT-CTTCCCTTGTGCCTATTTCGC 1968718 Query 166250 TATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGC 166309 | | || |||||| |||| || || || || || || ||||||||||||||| | || Sbjct 1968717 TTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGC 1968658 Query 166310 AAGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGC 166369 || ||| | || ||| || ||| | || || |||||||||||||| || || Sbjct 1968657 TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAG 1968598 Query 166370 TATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 166429 | | | |||||| | | | || ||||||||||| || ||||| ||||| | || Sbjct 1968597 TTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 1968538 Query 166430 GTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGG 166489 ||| ||| | || || || ||||| ||||||||||||||||| ||||| || |||| || Sbjct 1968537 GTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGG 1968478 Query 166490 TTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAA 166548 ||| ||| | || ||||||||| | ||||| ||| | | | || || || ||||||| Sbjct 1968477 TTTTATGTTACGTCAGTTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAA 1968419 Query 166549 TCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTC 166608 |||| || |||||||| |||||||| || ||| |||||| || || || || || |||| Sbjct 1968418 TCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTC 1968359 Query 166609 AATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTT 166668 |||| ||||||| || || || ||| || || | || || || |||||| | || | Sbjct 1968358 AATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATTCTCT 1968299 Query 166669 TCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTA 166728 | | ||||| || || || |||||| |||||||||||||||||||||| || || ||| Sbjct 1968298 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTG 1968239 Query 166729 TTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATC 166788 | || || | || |||| | || || ||||||| ||| ||||| || ||| | | | Sbjct 1968238 TACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 1968179 Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848 |||||||||| |||||||| ||| || || || | ||||||| |||||||| | Sbjct 1968178 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 1968119 Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGG 166877 |||||||||| || || ||||||| |||| Sbjct 1968118 ATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563655353627520