Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 104 3e-17 >seq7 Length=17303919 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || |||||||| || | || |||||||||||| | |||||| || || | || | Sbjct 446239 GTCCCTGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 446180 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || || | || | ||||| ||||| | ||| || || || | ||| || | ||| | Sbjct 446179 TACGTATTGATTGCGGAATCAATATCATCCTTG-TGGATGCCAACAGAAACCCTCATCAG 446121 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||| | |||| | || ||| || ||||||||| |||| | Sbjct 446120 CATGTGTTGAGGCCTTTCAACCACTTTGCCTTGTACTTTTAAGAGATATGATCTTTCAAG 446061 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| || | ||| ||| ||| ||||| || |||| Sbjct 446060 CGTTTTAAATCCAAAGTAATCATATTCAAAATCGCGATCATAAACAATT 446012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103368623720