Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 163 2e-34 seq6 134 1e-25 seq3 134 1e-25 seq8 123 2e-22 seq2 116 3e-20 seq7 114 1e-19 seq5 86.0 5e-11 >seq1 Length=19566579 Score = 163 bits (180), Expect = 2e-34 Identities = 522/802 (65%), Gaps = 12/802 (1%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 ||||||| |||||||||| || ||||| ||||| || ||||| || | ||| | | | Sbjct 5572651 TGGAGATACTCATCTTGGAGGTGAAGACTTTGACAACAGACTCGTGAACCAT--TTCGCT 5572594 Query 551847 GAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGT 551906 | || || | | ||| |||| ||| | || ||| | |||||| | | Sbjct 5572593 GCGGAGTTCAGGAGGAAACACAAGAAGGATATTGCTGGGAATGCGAGGGCTCTTAGGAGG 5572534 Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 | || || ||||| || || || || || | ||||| || | || || |||||| Sbjct 5572533 TTGAGGACGGCTTGTGAGAGGGCAAAGAGAACGCTTTCTTCCACAGCCCAGACAACTATT 5572474 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 || | ||||| | |||||| || || | || || | || || | |||| ||| Sbjct 5572473 GAGATTGATTCTCTGCATGAGGGTATCGACTTCTATGCGACCATCTCACGTGCCAGGTTT 5572414 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086 || || || ||| | || || ||| || || || || || ||||| | | | Sbjct 5572413 GAGGAGATGAACATGGATTTGTTCAGGAAATGTATGGATCCTGTGGAGAAAGTTCTTAAA 5572354 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 || | ||| |||| || || || || || | || ||||| || ||||||||||| Sbjct 5572353 GACGCCAAGCTTGACAAGGCCCGTGTGCACGAGGTGGTTCTTGTCGGAGGATCTACAAGG 5572294 Query 552147 ATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 ||||| ||||||| | | || ||| ||| ||| || || || | || || || Sbjct 5572293 ATTCCGAAAATTCAACAGCTTTTGCAAGA-CTTCTTT-AACGGGAAGGAGCTA--TGCAA 5572238 Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | | |||| || ||||| || ||||| ||||| || || |||| || ||||| || | Sbjct 5572237 GAGCATTAACCCTGATGAAGCCGTTGCTTATGGAGCTGCGGTTCAGGCTGCTATCCTGAC 5572178 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 ||| || || || | ||| || | | ||| | |||||| | || ||| || Sbjct 5572177 TGGTGAAGGAAGCGACAAGGTTCAAGATCTCTTGCTTCTTGATGTTGCACCGCTAAGCCT 5572118 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 ||| | || |||| || || | |||||| | || || || || || |||| Sbjct 5572117 TGGAATTGAGACAGCAGGTGGGGTGATGACTGTGTTAATTCCGAGGAACACCACGGTTCC 5572058 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 |||||| || | || || || |||||||| || ||||| | | ||| || || Sbjct 5572057 TTGTAAGAAGGAGCAAGTGTTCTCCACGTATTCGGACAATCAGCCAGGCGTTCTGATCCA 5571998 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502 | | |||||||| ||| | | || ||||| || || | |||||||| ||| | | Sbjct 5571997 AGTCTTTGAAGGGGAACGGGCAAGGACCAAAGACAACAACCTTCTTGGTACCTTTGAGCT 5571938 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562 | || ||||||||||| || |||||||| || ||||| | ||| || || ||||| Sbjct 5571937 CAAGGGCATTCCTCCTGCCCCACGTGGAGTTCCTCAAATCAATGTTTGCTTTGACATCGA 5571878 Query 552563 TGCCAATGGAATTTTGAATGTG 552584 ||| ||||| || || |||||| Sbjct 5571877 TGCAAATGGGATCTTAAATGTG 5571856 Score = 134 bits (148), Expect = 1e-25 Identities = 366/552 (66%), Gaps = 9/552 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || ||| | || || ||||| || ||||| || |||||| || | Sbjct 5573314 AGCTATTGGCATCGATCTCGGCACTACATACAGCTGTGTCGGAGTTTGGATGAACGACCG 5573255 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || | || ||||| || ||| | || || || || || || | ||||| Sbjct 5573254 TGTGGAGATCATCCCTAACGATCAGGGGAACCGCACGACACCGTCGTACGTCGCATTCAC 5573195 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || || | | | || || || || || |||||| | || ||| || Sbjct 5573194 TGACACCGAGCGGATGATCGGAGACGCGGCGAAGAATCAAGTTGCGTTGAACCCTCAGAA 5573135 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | || ||||| |||||| | || ||||| || || | |||| | |||| ||| Sbjct 5573134 CACTGTCTTCGATGCGAAACGTCTCATCGGAAGGAGATTCACTGATCCTTCTGTACAGAG 5573075 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAA--ACCTTAT-ATTGA 550287 |||||| || ||||| ||| | ||||| | | ||||| | | | || |||| Sbjct 5573074 TGATATGCGACACTGGCCGTTCAAGGTTGTTTCCGGTCCTGGAGACAAGCCGATGATTGT 5573015 Query 550288 AG-CTACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 | || | || ||| || | || || ||||| || || | || || || ||||| Sbjct 5573014 CGTCTCGTACAAGAACGAAGAG--AAGCAGTTTTCTCCTGAGGAGATATCTTCCATGGTG 5572957 Query 550346 TTAATGAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 || |||| |||| || || ||| |||| ||||||| | |||| | || || Sbjct 5572956 TTGGTGAAGATGAGGGAAGTCGCTGAGT-CTTTCCTTGGTCACGCTGTTAATAACGCTGT 5572898 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 | ||||| || || || || || |||||||| | || ||||| || || || ||| Sbjct 5572897 TGTGACTGTTCCTGCTTACTTCAACGACTCACAGAGACAGGCTACCAAGGACGCCGGAGC 5572838 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 ||| |||| |||||||| || || |||||||||||||| ||||| || || | || || Sbjct 5572837 TATCTCTGGGCTTAATGTACTGCGGATTATCAATGAACCGACTGCAGCAGCTATAGCTTA 5572778 Query 550525 TGGACTTGATAA 550536 || || ||||| Sbjct 5572777 CGGTCTGGATAA 5572766 Score = 111 bits (122), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320 || || |||||||| || ||| | | ||| || ||||||||||| ||||| | || Sbjct 19037653 AGCACGAGATGAAGAGTTGACTCTTTCTGG--ATGTTGTAATCAGCAAGAGTGCGACCAT 19037596 Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380 | ||||| |||||||| |||||||| |||||||| || || || | ||| ||||| || | Sbjct 19037595 CCTCAAGCTGTTTTCCAGCAAAAATGAGTCTTTGTTGGTCTGGTGCAATCCCTTCCTTGT 19037536 Query 563381 CTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAG 563440 |||| || || || || |||||||| |||| | | ||| | ||| | || Sbjct 19037535 CTTGGATCTTGGCCTTCACGTTATCAATTGTGTCAGAGCTCTCAACTTCCAAAGTTATAG 19037476 Query 563441 TTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || |||||||| || || || ||||| ||||| Sbjct 19037475 TCTTTCCAGTAAGGGTCTTTACAAAAATCTGCAT 19037442 Score = 102 bits (112), Expect = 7e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| || ||| |||| || |||||| ||||||||||||| || || | ||| Sbjct 3000764 ATAGGGATCGATCTAGGGACTACATATTCATGTGTTGGTGTTTATCATAACAAACACGTT 3000705 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| || || || ||||| || ||||||| ||| ||||||| ||| | ||||| || Sbjct 3000704 GAAATCATAGCAAACGATCAGGGGAACAGAATTACACCATCTTGGGTTGCATTCACTGAT 3000645 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||||| | | |||| || || || || ||||||| | || ||| || Sbjct 3000644 ACTGAACGTCTCATTGGAGAAGCTGCTAAGAATCAAGCGGCCAAGAACCCTGAGCGGACC 3000585 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAA 550205 || || || | |||||| | |||||||||| Sbjct 3000584 ATCTTCGACCCAAAACGTCTGATTGGAAGAA 3000554 >seq6 Length=16577294 Score = 134 bits (148), Expect = 1e-25 Identities = 463/708 (65%), Gaps = 13/708 (2%) Strand=Plus/Minus Query 551890 CCAA-AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCT 551948 |||| ||||||| | | | |||||||| || || ||||| || | ||||||| || Sbjct 494095 CCAAGAGCTCTTAGGAGGTTGAGAACTGCCTGTGAGAGAGCAAAGAGGACTCTTTCCTCC 494036 Query 551949 GGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGA-TTATAATACGCC 552007 | |||| ||||| || || | || || ||| ||||| ||||| || || | | || Sbjct 494035 ACTGCTCAGACCACCATCGAGATTGACTCTCTATACGAGGGTATTGACTTCTACTCCACC 493976 Query 552008 TATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACC 552067 || | | || | |||||| || || ||||||||||| || || || || Sbjct 493975 -ATCACCCGTGCTAGATTTGAGGAGCTTAACATGGATCTCTTTAGGAAGTGTATGGAGCC 493917 Query 552068 AGTAGAACAAGTTT-TAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGC 552126 ||| || |||| | | | ||| | ||||| || || || || || || | || | Sbjct 493916 AGTTGAG-AAGTGTCTCCGTGATGCTAAGATGGACAAGAGCACTGTTCACGATGTCGTCC 493858 Query 552127 TTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAAT 552185 |||||||||| || || | || ||||| ||| || || || || ||| || ||| Sbjct 493857 TTGTTGGTGGTTCCACCCGTATCCCTAAGGTTCAGCAATTGCTTCAGGACTTCTT-CAAC 493799 Query 552186 GGTAAAAAATTAAATGAAAGTGTT--AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAA 552243 || ||| | | || |||| | || || |||||||||||||| |||||||| || Sbjct 493798 GGCAAAGAGCTT--TGCAAGTCTATAAACCCCGATGAGGCTGTTGCATATGGTGCTGCCG 493741 Query 552244 TTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAG 552303 | || | ||||||||| ||| || | || || | ||| || || | | | | Sbjct 493740 TCCAGGGAGCTATTCTCAGTGGTGAAGGAAACGAGAAGGTTCAAGATCTTCTGTTGCTCG 493681 Query 552304 ATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCG 552363 |||| |||||||| || |||||||| ||||| | || ||| | ||||| | | | ||| Sbjct 493680 ATGTCACTCCTCTCTCCCTTGGTTTGGAAACTGCCGGTGGTGTCATGACCACTTTGATCC 493621 Query 552364 ATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATC 552423 ||||| || || || || || || | || || ||||| || ||||| || | Sbjct 493620 CAAGAAACACAACAATCCCAACCAAGAAGGAGCAGGTCTTCTCTACCTACTCAGACAACC 493561 Query 552424 AAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATC 552483 | ||| ||| || || | | |||||||||||| || || || || || | Sbjct 493560 AGCCTGGTGTGTTGATCCAGGTGTACGAAGGAGAAAGAGCCAGAACCAAGGACAACAACC 493501 Query 552484 AACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTG 552543 || |||| ||| | | || || || || ||||| ||||| || || || || Sbjct 493500 TTCTCGGTAAATTTGAGCTCTCCGGAATCCCACCGGCTCCACGTGGTGTGCCTCAGATCA 493441 Query 552544 AAGT-TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 ||| | |||| || || || |||||||| || | || || ||||| Sbjct 493440 CAGTGTGCTTT-GACATTGACGCCAATGGTATCCTCAACGTTTCTGCT 493394 Score = 109 bits (120), Expect = 4e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| |||||||| |||||||| ||| ||||| |||||||| ||||| ||||| | Sbjct 6990663 AGACGAAGTACAAGGTGAAGGGTCGACTCCTTTTGG--ATATTGTAGTCAGCAAGAGTCC 6990720 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || |||||||| || || || || || ||||| || ||||| || || || ||||| | Sbjct 6990721 TTCCGTCTTCAAGCTGCTTGCCCGCGAATATAAGCCTCTGCTGGTCCGGTGGGATTCCCT 6990780 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 |||||||||| || || ||| || ||||| || || | | | ||||| | Sbjct 6990781 CTTTATCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCGAGGG 6990840 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | ||||| ||||| | || || || || || |||||| Sbjct 6990841 TGATGGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 6990881 Score = 107 bits (118), Expect = 2e-17 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| | ||| ||||||||||| ||| || || || || || ||||| | ||| || Sbjct 2563074 GAGCCTGAGAACAAGATGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCT 2563133 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||||||||| ||||| || || || | ||| ||||| || || || ||||| || Sbjct 2563134 GCCGTCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTC 2563193 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAG 563434 |||||||||||||| ||| || || || || |||| | | || || | || Sbjct 2563194 CTTATCTTGAATTTTAGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCAC-CTCCAAAG 2563252 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||| || |||||||| ||||| ||||| || |||||| Sbjct 2563253 TAATAGTCTTTCCAGTAAGGGTTTTGACGAAGATCTGCATA 2563293 Score = 107 bits (118), Expect = 2e-17 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| || || ||||| |||||| || | ||||| || ||||||||||| || || Sbjct 6990206 GAGACGAAGCACGAGATGCAGGGTAGACTCTTTTTGG--ATGTTGTAATCAGCGAGGGTA 6990263 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | |||||||| ||||| |||||||| || ||||| ||||| || || || || ||| Sbjct 6990264 CGTCCGTCTTCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCT 6990323 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 || || |||||||| ||| || || || ||||| || | | | || | | Sbjct 6990324 TCCTTGTCTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCCAAA 6990383 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||| || || || || || || || ||||| |||||| Sbjct 6990384 GTGATAGTCTTGCCGGTTAGGGTCTTTACAAAAATCTGCATA 6990425 Score = 104 bits (114), Expect = 2e-16 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 563259 ACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||| || | ||| ||||| ||| | | ||| || |||||||| || | || | Sbjct 6990893 ACGGAGAACCAAATGGAGGGTGGACTCTTTCTGG--ATGTTGTAATCGGCCAAGGTGCGG 6990950 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||| ||||| ||||| || || | ||||||||| || |||||||| ||||| Sbjct 6990951 CCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCC 6991010 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGT 563435 || || || || ||| || || || || || |||| | | || | | ||||| Sbjct 6991011 TTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACCT-CAAGAGT 6991069 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || |||||||| || ||||| |||||||||||||| Sbjct 6991070 GATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 104 bits (114), Expect = 2e-16 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || || ||||| || | ||||||||| ||| | | ||| || |||||||| || | | Sbjct 8339197 CTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGG--ATGTTGTAATCTGCCAAGG 8339140 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || ||||| || || || || | |||||||||||| |||||||| | Sbjct 8339139 TACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGAATGC 8339080 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| || || || || || || || ||||| || |||| | | |||| Sbjct 8339079 CTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGA 8339020 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| | || || ||||| || ||||| |||||||||||||| Sbjct 8339019 GAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 102 bits (112), Expect = 7e-16 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || ||||| || || | ||| ||||| ||| | | ||| || ||||||||||| | | Sbjct 6990432 CTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGG--ATGTTGTAATCAGCCAAGG 6990489 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | ||| || || || || |||||||| ||||| || |||||||| || || |||| Sbjct 6990490 TGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGGATTC 6990549 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 | ||||||||||| || || ||| || ||||| ||||| | | | || | Sbjct 6990550 CCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTCTCAACCTCTA 6990609 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || | ||||||||||| ||||| || || || || |||||| Sbjct 6990610 GGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATCTGCATA 6990653 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || |||||||| || ||||||||||| || |||||||| || Sbjct 490683 ACTGTCCCTGCTTACTTCAATGACTCTCAGCGTCAAGCTACAAAGGATGCTGGTGTCATC 490624 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | |||||||| ||||| ||||| || || || |||||||| |||| || || Sbjct 490623 GCTGGTTTGAATGTTCTGCGTATCATCAACGAGCCGACCGCTGCTGCTATTGCCTACGGT 490564 Query 550529 CTTGATAA 550536 || || || Sbjct 490563 CTCGACAA 490556 Score = 91.5 bits (100), Expect = 1e-12 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || ||||| ||| |||| || || || ||| ||||| || |||||| | | Sbjct 495225 GCGATCGGTATCGATCTAGGTACTACTTACTCTTGCGTTGGAGTATGGCAACACGACCGT 495166 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| || ||||||||||||||||| |||||||| || |||||||| || ||||||| Sbjct 495165 GTTGAGATCATTGCCAATGATCAAGGAAACAGAACCACCCCATCTTACGTAGCTTTCACC 495106 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || | || || | |||||||| || || |||| Sbjct 495105 GACTCCGAGAGGTTGATCGGTGATGCCGCTAAGAATCA 495068 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || | |||||||| ||| || ||||||||||| || || || | Sbjct 8339423 GAGACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCG 8339364 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| || | |||||| |||||||| |||||||| |||||||| || || ||||| || Sbjct 8339363 ACCATCCTCTAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGGATTCCCTC 8339304 Query 563376 TTTATCTTGAATTTT 563390 |||||| || || || Sbjct 8339303 TTTATCCTGGATCTT 8339289 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 563262 GAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 ||| |||||||||||||| ||| | ||| || |||||||| || || ||||| Sbjct 14990369 GAGAACAAGATGAAGGGTGGACTCCTTCTGG--ATGTTGTAATCGGCAAGGGTTCTGCCG 14990312 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || ||||| |||||||| || || | || ||||| || ||||| || || || || Sbjct 14990311 TCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTG 14990252 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAAC 563438 ||||| || || ||| || || || || |||| | || |||||||||| Sbjct 14990251 TCTTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCAC-CTCGAGAGTAAT 14990193 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || || || ||||| |||||||| |||||| Sbjct 14990192 CGTCTTTCCGGTTAGGGTTTTGACGAAAATCTGCATA 14990156 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | ||||| |||||||| || || ||| |||||||| ||||| || | Sbjct 8339650 AGACGCAACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCCGCTAGTGTGCGA 8339591 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||| ||||| || || || || |||||||| || || || || || ||||| Sbjct 8339590 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCC 8339531 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || ||||| || || || |||||||| || | | | ||| | || Sbjct 8339530 TTTTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACTTCCAAGGTG 8339471 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| || ||||| | ||| || || |||||||||||| Sbjct 8339470 ATAGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCATA 8339432 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| || ||||| ||| || ||| ||||| ||||| | || | |||||| | Sbjct 2563542 CAAG-TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCTTCGA 2563600 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | || ||||||||||| ||||| ||||||||||| ||||| || ||||| || || || | Sbjct 2563601 GCTGCTTTCCGGCAAAGATAAGCCTTTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGA 2563660 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGTAACAGTTTTA 563445 | || || || || ||||| |||| | | || ||||| || | ||| || Sbjct 2563661 TCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTTTCCAC-CTCGAGGGTGATAGTCTTC 2563719 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| ||||| || || ||||| Sbjct 2563720 CCGGTGAGAGTCTTAACAAAGATCTGCAT 2563748 >seq3 Length=15040190 Score = 134 bits (148), Expect = 1e-25 Identities = 546/842 (65%), Gaps = 20/842 (2%) Strand=Plus/Minus Query 551743 CTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATC 551802 ||||||| | | ||||| ||| ||||| || || ||| |||||| |||||| Sbjct 2932705 CTCTTCTCACCATTGAAGAAGGTATCTTTGAAGTCAAGGCCACTGCTGGAGACACTCATC 2932646 Query 551803 TTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACG 551860 ||||||| || ||||| || || ||| |||| | || | ||| |||| || || | Sbjct 2932645 TTGGTGGTGAGGATTTCGACAACAGAATGGTCAACCAC--TTTGTCCAAGAGTTCAAGAG 2932588 Query 551861 AAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCT 551918 ||| ||||| || ||| | | | | | | ||| || | | || ||||| || Sbjct 2932587 AAAGAACAAGAAGGACATC-AGCGGTAACC-CGAGAGCACTAAGGAGGCTGAGAACCGCC 2932530 Query 551919 TGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCA 551978 ||||| ||||| || | |||| || ||| | |||| || || |||||| | || ||| Sbjct 2932529 TGCGAGAGAGCGAAGAGGACTCTCTCCTCTACTGCTCAGACTACCATTGAAATCGACTCA 2932470 Query 551979 TTATTTGAGGGAATTGA-TTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTG 552037 || ||||| || | || || || | | || || | | |||| ||| || || || Sbjct 2932469 TTGTTTGATGGTGTCGACTTCTACT-CTCCAATCACCCGTGCCAGATTCGAGGAGCTTAA 2932411 Query 552038 TTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAGATTCAAAGA 552096 ||||| || ||||| || || || || || |||| | | | ||| | |||| Sbjct 2932410 CATGGATCTTTTCAGAAAGTGTATGGAGCCTGTCGAG-AAGTGTCTTCGTGATGCTAAGA 2932352 Query 552097 TTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAA 552156 | || || | || |||| |||| |||||||| || ||||| | || || || Sbjct 2932351 TGGACAAGAACTCTGTCGATGATGTTGTCCTTGTTGGGGGCTCTACCCGTATCCCCAAGG 2932292 Query 552157 TTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCC 552214 | | || || | || |||||||| || | | || || | | || || Sbjct 2932291 TCCAACAATTGCTCCTAGATTTCTTCAATGGCAAGGAGCTT--TGCAAATCCATCAACCC 2932234 Query 552215 AGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGA 552274 |||||||||||||| || ||||| || | || |||||||||||| || | | | Sbjct 2932233 CGATGAGGCTGTTGCATACGGTGCAGCTGTCCAGGCAGCTATTCTTAGCGGTGAGGGTAA 2932174 Query 552275 TGAAAAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCTCTTGGTTTAGAAA 552333 || || | ||| || | | |||| | ||||| || || || ||||| ||| | |||| Sbjct 2932173 CGAGAAGGTTCAAGATCTCCT-CTTGCTCGATGTCACACCACTTTCTCTCGGTCTTGAAA 2932115 Query 552334 CAGTTGGAGGTATTATGACTAATCTT-ATCGATAGAAATACTACTATTCCTTGTAAAAAA 552392 ||| |||||| | |||||| |||| ||| | |||||||| || || || || ||| Sbjct 2932114 CAGCTGGAGGAGTCATGACT-GTCTTGATCCAGAGAAATACAACCATCCCCACAAAGAAA 2932056 Query 552393 TCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAA 552452 | || || ||||| |||||||| || || | | ||| || ||| | |||||| Sbjct 2932055 GAACAAGTCTTCTCTACTTATTCAGACAACCAGCCCGGTGTCTTGATCCAAGTCTTTGAA 2931996 Query 552453 GGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATT 552512 || |||||| | || || || || || | | |||| || | | ||||| Sbjct 2931995 GGCGAAAGAGCAAGAACCAAGGACAACAACCTTTTGGGTAAATTCGAGCTTTCTGGTATC 2931936 Query 552513 CCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGA 552572 ||||| ||||| | || || || ||||| || |||||| || ||||| || || Sbjct 2931935 CCTCCAGCTCCAAGAGGTGTTCCTCAAATCACTGTCTGTTTCGACATTGATGCGAACGGT 2931876 Query 552573 AT 552574 || Sbjct 2931875 AT 2931874 Score = 132 bits (146), Expect = 4e-25 Identities = 509/791 (64%), Gaps = 10/791 (1%) Strand=Plus/Minus Query 551799 CATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTA 551856 ||||||||||| || || ||||| || ||| |||| | ||| | |||| | || |||| Sbjct 4087554 CATCTTGGTGGTGAGGACTTTGACAACAGAATGGTTAACCAT--TTTGTTCAGGAGTTTA 4087497 Query 551857 AACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTG 551916 | | || ||||| ||| | || | | | ||| | | || || || || | Sbjct 4087496 AGAGGAAGAACAAGAAGGATATTACTGGCAATCCGAGGGCTTTGAGGCGGCTTAGGACAG 4087437 Query 551917 CTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATT 551976 |||| || | ||||| | |||| || || | ||||||| ||||||||| | || | Sbjct 4087436 CTTGTGAGCGGGCCAAGAGGACTCTCTCTTCGACTGCTCAAACGACTATTGAAATCGACT 4087377 Query 551977 CATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTT 552036 | | | ||||| ||||||| | || | || | | || | ||| || || | Sbjct 4087376 CTCTCTACGAGGGTATTGATTTCTACACAACCATCACCCGTGCTAGATTCGAGGAGCTCA 4087317 Query 552037 GTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT-TTTAAGAGATTCAAAG 552095 || | || || || || |||||||| || |||| ||| |||||| | ||| Sbjct 4087316 ACATGGACTTGTTCAGGAAGTGTATGGAACCAGTGGAG-AAGTGTTTGAGAGATGCTAAG 4087258 Query 552096 ATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAA 552155 || || || || || || || |||| ||||||||||| || ||||||||||| || Sbjct 4087257 ATGGACAAGAACAGCGTCCACGATGTTGTCCTTGTTGGTGGCTCCACAAGAATTCCCAAG 4087198 Query 552156 ATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATC 552213 | | | | || ||| ||| |||||| || ||| | | | |||| |||| | Sbjct 4087197 GTGCAGCAGCTTTTGCAAG-ACTT-TTTCAACGGGAAAGAGCTGTGTAAAAGCATTAACC 4087140 Query 552214 CAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTG 552273 | || ||||||||||| || || || || | ||||| || || || || || Sbjct 4087139 CGGACGAGGCTGTTGCTTACGGAGCAGCTGTCCAAGCTGCGATCCTGAGCGGTGAAGGGA 4087080 Query 552274 ATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAA 552333 | || || | ||| | | ||||| | ||||| |||||||| || || ||| | |||| Sbjct 4087079 ACGAGAAGGTCCAAGACTTGTTACTTCTTGATGTCACTCCTCTGTCCCTGGGTCTGGAAA 4087020 Query 552334 CAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAAT 552393 | | || || |||||||| || || || || || || ||||| || ||| Sbjct 4087019 CCGCCGGTGGAGTTATGACTGTCCTGATTCCAAGGAACACAACCATTCCGACAAAGAAAG 4086960 Query 552394 CTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAG 552453 | |||| ||||| |||||||| || || | | ||| || || | | |||| Sbjct 4086959 AGCAGATATTCTCTACCTATTCAGACAACCAGCCGGGTGTACTGATCCAGGTCTACGAAG 4086900 Query 552454 GAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTC 552513 | || ||| | || || || || || | | || | || | | ||||| | Sbjct 4086899 GGGAGAGAGCAAGGACAAAGGACAACAACCTTTTGGGAAAGTTCGAGCTCAGCGGTATAC 4086840 Query 552514 CTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAA 552573 | |||||||| || || || || |||||| || |||||| ||||| |||||||| | Sbjct 4086839 CACCTGCTCCACGAGGTGTTCCCCAAATTACGGTATGTTTCGACATCGACGCCAATGGTA 4086780 Query 552574 TTTTGAATGTG 552584 | |||||||| Sbjct 4086779 TCCTGAATGTG 4086769 Score = 107 bits (118), Expect = 2e-17 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || ||||| ||| | || ||||| ||| ||||||||| ||||||||| | | Sbjct 2933554 AGCGATTGGTATCGATCTCGGTACCACGTATTCTTGTGTTGGAGTTTGGCAACACGACCG 2933495 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||| || ||||| ||||| ||||||||||| || || || ||||| || | ||||| Sbjct 2933494 TGTTGAGATCATTGCTAATGACCAAGGTAACAGGACCACGCCGTCTTACGTCGCCTTCAC 2933435 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || || |||| || |||||||||| || || |||| Sbjct 2933434 TGACACCGAACGGTTGATTGGTGATGCCGCCAAGAATCA 2933396 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||| | | || || | || || || || ||||| || || || || ||||| || || Sbjct 4087824 GTTAAGAACGCTGTGGTTACCGTGCCTGCTTATTTCAACGATTCTCAGCGTCAGGCGACC 4087765 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || || |||||| ||| |||| || ||||| | ||||| |||||||| ||||||||| Sbjct 4087764 AAGGACGCTGGAGTTATCTCTGGTCTCAATGTGATGCGTATCATCAATGAGCCTACTGCT 4087705 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| ||||| || Sbjct 4087704 GCTGCCATTGCTTATGGTCTTGACAA 4087679 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || ||||| || || || || || || |||||||| ||| Sbjct 2932901 ACTGTCCCTGCTTACTTCAACGACTCTCAGCGCCAGGCAACAAAGGATGCTGGTGTCATT 2932842 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | ||||| | ||||| ||||| || |||||||||||||| |||| ||||| Sbjct 2932841 GCTGGTTTGAATGTCATGCGTATCATCAACGAGCCTACTGCTGCTGCTATTGCTTATGGT 2932782 Query 550529 CTTGATAA 550536 ||||| || Sbjct 2932781 CTTGACAA 2932774 Score = 91.5 bits (100), Expect = 1e-12 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| ||||| ||| | || || || || ||| || |||||||||||| ||| Sbjct 4088491 AGCTATTGGTATCGATCTCGGTACTACCTACTCTTGCGTCGGTGTTTGGCAACATGACCG 4088432 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 |||||||| || ||||| ||||| |||||| | || ||||| || || ||| ||||||| Sbjct 4088431 CGTTGAAATCATCGCCAACGATCAGGGTAACCGTACCACTCCCTCCTACGTTGCTTTCAC 4088372 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || | || | | | | || ||||| || || |||| | | | || |||||||| Sbjct 4088371 TGACAGCGAGCGTCTCATCGGAGATGCCGCCAAGAATCAGGTCGCCATGAACCCTACCAA 4088312 Query 550171 TAC 550173 || Sbjct 4088311 CAC 4088309 >seq8 Length=13324298 Score = 123 bits (136), Expect = 2e-22 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || || || ||||| |||||| | ||||||||||||||| Sbjct 6185460 GCGGTCATTACTGTGCCTGCTTACTTCAATGATTCACAAAGGACGGCTACTAAAGATGCT 6185519 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||||||||||||||| | | |||||||||||||||||||| |||||||||||| | | Sbjct 6185520 GGACGTATTGCTGGATTGGAAGTTCTTCGTATTATCAATGAGCCTACTGCTGCTTCTTTG 6185579 Query 550520 GCATATGG 550527 || ||||| Sbjct 6185580 GCTTATGG 6185587 >seq2 Length=14066726 Score = 116 bits (128), Expect = 3e-20 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 ||||||||||| || | || | | ||| ||||| ||||| |||||||| || | |||| Sbjct 7053652 ATATTGTAATCCGCCAAGGTACGTCCATCCTCAAGCTGTTTACCGGCAAAGATCAATCTT 7053711 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||| ||||| || ||||| || || ||||| ||| || || || || || Sbjct 7053712 TGCTGATCCGGAGGGATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTG 7053771 Query 563413 TCAGTG-TGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| | | ||| || ||||||| || || |||||||| ||||| ||||||||||| Sbjct 7053772 TCAGAGCTCTCTAC-CTCAAGAGTAATGGTCTTGCCAGTAAGTGTTTTCACGAAAATTTG 7053830 Query 563472 CAT 563474 ||| Sbjct 7053831 CAT 7053833 Score = 102 bits (112), Expect = 7e-16 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 |||||||| ||||||||||| || || ||| ||||| || ||||||||||| || | Sbjct 7053157 CTGAGACGAAGTACAAGATGGAGAGTAGACTCCTTTTGG--ATGTTGTAATCAGCAAGGG 7053214 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | ||||||||| ||||| || ||||| || ||||| || || || || || |||| Sbjct 7053215 TGCGACCATCTTCAAGCTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATTC 7053274 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| || || ||||| || || || |||||||| || | | | || | Sbjct 7053275 CTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACCTCCA 7053334 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| | || || || ||||| || || || ||||| |||||| Sbjct 7053335 AAGTTATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCATA 7053378 Score = 96.9 bits (106), Expect = 3e-14 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAG 563311 |||||||| || |||||||| || ||| || ||||| || ||||||||||| || | Sbjct 7053385 CTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGG--ATGTTGTAATCAGCAAGTG 7053442 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | ||| || | || || || ||||| ||||| || |||||||| |||||||| | Sbjct 7053443 TGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATCC 7053502 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| || || ||||| || ||| || ||||| ||||||| | | || | Sbjct 7053503 CTTCCTTGTCCTGAATCTTAGCTTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCCA 7053562 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| ||||| || || | || || || || || |||||| Sbjct 7053563 AAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCATA 7053606 >seq7 Length=17303919 Score = 114 bits (126), Expect = 1e-19 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || ||||| ||||| ||| ||||| ||||||||||| || || |||| Sbjct 14231201 GAGACGAAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCTGCAAGTGTTCG 14231260 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| |||||||| |||||||| || ||||| ||||| || || | || ||||| Sbjct 14231261 ACCATCTTCGAGTTGTTTACCGGCAAAGATTAGTCTCTGCTGGTCCGGTGTGATCCCTTC 14231320 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAG 563434 ||| |||||||| || || || ||||| ||||||| | | || || |||| Sbjct 14231321 TTTGTCTTGAATCTTGGCCTTCACGTTATCAATCGTATCAGAGCTCTCGAC-CTCTAGAG 14231379 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | ||||| || || | ||| || || ||||| ||||| Sbjct 14231380 TGATGGTTTTGCCCGTCAAAGTCTTGACAAAAATCTGCAT 14231419 Score = 105 bits (116), Expect = 5e-17 Identities = 162/228 (71%), Gaps = 20/228 (9%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || |||||||||||||| ||| | ||| || ||||||||||| | ||| | Sbjct 14231886 AGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGG--ATGTTGTAATCAGCCAAAGTAC 14231943 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || || |||||||| || |||||||||||||| ||||| || |||| || |||| Sbjct 14231944 GACCGTCCTCGAGTTGTTTACCTGCAAAAATAAGTCTCTGCTGGTCCGGAGTGATGCCTT 14232003 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT--ATCAGTGTGAGTACATTCG-- 563430 | |||||||| || || || || ||||| ||| |||| || || |||| Sbjct 14232004 CCTTATCTTGGATCTTCGCCTTCAC-------ATTGTCAATC-GTGTCAGAACTTTCGAC 14232055 Query 563431 ----AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | || || || ||||| || ||||| || |||||||| Sbjct 14232056 CTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTAACAAAGATTTGCAT 14232103 Score = 104 bits (114), Expect = 2e-16 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475 |||| ||||| || || | ||| | || ||||| || |||||||| ||||||||| | Sbjct 15184982 CAGCTTATTTCAACGATGCCCAAAGGCAGGCTACGAAGGATGCTGGTGTTATTGCTGGGC 15185041 Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATA 550535 |||||||| | | || ||||| ||||||||||||||||| |||| ||||| || |||| Sbjct 15185042 TTAATGTTGCTAGAATCATCAACGAACCTACTGCTGCTGCTATTGCCTATGGTCTGGATA 15185101 Query 550536 AA 550537 || Sbjct 15185102 AA 15185103 Score = 98.7 bits (108), Expect = 8e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475 |||| || || || || | ||| | || ||||| || |||||||| ||||||||| | Sbjct 15175407 CAGCTTACTTCAACGATGCCCAAAGGCAGGCTACCAAGGATGCTGGTGTTATTGCTGGGC 15175466 Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATA 550535 |||||||| | | || ||||| ||||||||||||||||| |||| ||||| || |||| Sbjct 15175467 TTAATGTTGCTAGAATCATCAACGAACCTACTGCTGCTGCTATTGCCTATGGTCTGGATA 15175526 Query 550536 AA 550537 || Sbjct 15175527 AA 15175528 Score = 95.1 bits (104), Expect = 1e-13 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | || || || ||||| || || || || || |||||||| | ||| | Sbjct 6237531 AAGTAACCAAGGCTGTCATCACTGTGCCTGCTTACTTCAACGACTCACAGAGGACAGCAA 6237472 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||||||||||||||| || || || | Sbjct 6237471 CAAAAGATGCTGGTCGAATTGCTGGTTTGGAAGTTCTTCGTATTATCAACGAGCCCACAG 6237412 Query 550509 CTGCTGCACTTGCATATGGACTTGA 550533 ||||| || | || ||||| |||| Sbjct 6237411 CTGCTTCATTGGCTTATGGGTTTGA 6237387 Score = 95.1 bits (104), Expect = 1e-13 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 || |||||| || ||| | || || || || |||||||||||||| | |||||| | Sbjct 15174793 AGTTATAGGGATTGATCTTGGTACAACTTACTCTTGTGTTGGTGTTTACAAGAATGGTCA 15174852 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||||||||||| || ||||| ||| | | |||||| || | ||| ||| || Sbjct 15174853 CGTTGAAATTATTGCCAACGACCAAGGAAACCGTATTACTCCTTCCTGGGTTGGTTTTAC 15174912 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCT 550165 || |||| | ||||||| || || || ||||||| ||| ||| ||| Sbjct 15174913 TGACTCTGAGAGGCTCATTGGTGAGGCTGCTAAGAATCAAGCGGCTGTTAACCCT 15174967 Score = 95.1 bits (104), Expect = 1e-13 Identities = 233/348 (67%), Gaps = 4/348 (1%) Strand=Plus/Plus Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT-AAGT 552173 |||| ||||| |||||||||||| || || || || || ||| || | || ||| Sbjct 15185650 ATGAGATTGTCCTTGTTGGTGGAAGCACCAGGATCCCAAAGGTTCAGCAACTATTGAAGG 15185709 Query 552174 TCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTAT 552233 ||| ||| || |||||| | ||| | |||| || || || ||||||||||| ||| Sbjct 15185710 ACTTCTTTGAA-GGTAAAGAGCCAAACAAGGGTGTGAACCCCGACGAGGCTGTTGCTTAT 15185768 Query 552234 GGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGA-AAAACTACAAAATAT 552292 ||||| || |||| | | |||| | ||| || | ||| | || | || |||| Sbjct 15185769 GGTGCTGCTGTTCAGGGTGGTATTTTGAGCGGAGAAGGCGGTGATGAGACCA-AAGATAT 15185827 Query 552293 TGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGAC 552352 | | ||| | ||||| | || || || | ||| | || || || ||||| | ||||| Sbjct 15185828 TCTTCTTCTTGATGTGGCACCACTCACTTTGGGTATTGAGACTGTAGGAGGAGTGATGAC 15185887 Query 552353 TAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTA 552412 || || ||| ||||| || |||||| || ||||||| || || | ||||| Sbjct 15185888 AAAGCTGATCCCAAGAAACACGGTTATTCCAACCAAGAAATCTCAGGTTTTCACAACGTA 15185947 Query 552413 TTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAG 552460 ||| | || || |||| |||| || | |||||||| ||||| Sbjct 15185948 CCAAGACCAGCAGACAACTGTCTCAATCCAGGTCTTTGAAGGTGAAAG 15185995 Score = 93.3 bits (102), Expect = 3e-13 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||||||||| ||||| | || | |||||||||||| || || ||||| ||||| || Sbjct 14232605 AATATTGTAGTCAGCCAATGTACGACCATCTTCAAGTTGCTTGCCTGCAAAGATAAGCCT 14232664 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||||| || |||| ||| ||||| |||||||| || || || || ||||| || Sbjct 14232665 CTGCTGGTCCGGAGTAATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATCGT 14232724 Query 563412 ATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| | | || ||||| | || || || |||||||| ||||| || || || Sbjct 14232725 GTCAGAGCTTTCAACCTCAAGAGTTATGGTCTTCCCGGTAAGAGTCTTAACAAAGATCTG 14232784 Query 563472 CATA 563475 |||| Sbjct 14232785 CATA 14232788 Score = 91.5 bits (100), Expect = 1e-12 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||||||||||||||| || |||| ||| || ||||| || || ||| |||||||| Sbjct 14232377 AATATTGTAATCAGCAAGGGTTCGACCATCCTCGAGTTGCTTGCCCGCATGGATAAGTCT 14232436 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 |||||| || || | |||||| | || ||||| || || || || ||||| || Sbjct 14232437 TTGCTGGTCCGGTAGGATTCCTACCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGT 14232496 Query 563412 ATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| | | ||| ||| ||| ||||| || || |||||||| || || ||||| Sbjct 14232497 GTCAGAGCTCTCAACTTCTAGAATAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTG 14232556 Query 563472 CAT 563474 ||| Sbjct 14232557 CAT 14232559 Score = 91.5 bits (100), Expect = 1e-12 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 || |||||| || ||| | || || || || |||||||||||||| | |||||| | Sbjct 15184365 AGTTATAGGGATTGATCTTGGTACAACTTACTCTTGTGTTGGTGTTTACAAGAATGGTCA 15184424 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||||||||||| || ||||| ||| | | |||||| || | ||| ||| || Sbjct 15184425 CGTTGAAATTATTGCCAACGACCAAGGAAACCGTATTACTCCTTCCTGGGTTGGTTTTAC 15184484 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCT 550165 || |||| | ||||||| || || || |||| || ||| ||| ||| Sbjct 15184485 TGACTCTGAGAGGCTCATTGGTGAGGCTGCTAAGAATCAGGCGGCTGTTAACCCT 15184539 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| ||||| ||||| | || || ||||| || || |||||||| ||| Sbjct 796204 ACCGTTCCAGCTTATTTCAATGATGCTCAGCGACAAGCCACAAAGGATGCTGGGAAAATT 796263 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| ||| |||| | | || ||||| |||||||| ||||||||||| ||||||| Sbjct 796264 GCTGGTCTTGATGTCCAGAGGATCATCAACGAACCTACAGCTGCTGCACTATCATATGG 796322 >seq5 Length=13709650 Score = 86.0 bits (94), Expect = 5e-11 Identities = 141/200 (71%), Gaps = 15/200 (8%) Strand=Plus/Plus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| | ||| |||||||||| | || | ||| || || ||||| |||||||| Sbjct 4166062 TCTTTCGGAATGCTGTAATCAGCCAAGGTACGACCATCCTCGAGCTGTTTACCGGCAAAG 4166121 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCC 563403 || | | |||||| ||| |||| ||||||||||||||||| || ||||| ||| | Sbjct 4166122 ATCATTTGTTGCTGGTCAAGAGGGATTCCTTCTTTATCTTGGATCTTTTGCCTTA---AC 4166178 Query 563404 TCAATTGT--ATCAGTGTGAGTACATTCG------AGAGTAACAGTTTTACCAGTAAGAG 563455 | |||| |||| ||| | | |||| ||||| || || || || |||||| Sbjct 4166179 T---TTGTGGATCA-TGTCGGAGCTTTCGACCTTAAGAGTTACGGTCTTGCCTGTAAGAC 4166234 Query 563456 TTTTAACGAAAATTTGCATA 563475 |||| || || || |||||| Sbjct 4166235 TTTTGACAAAGATCTGCATA 4166254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029255120273770