Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 >seq7 Length=17303919 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||||||||||| ||| | || || |||||||| ||| |||||||| ||||| ||||| Sbjct 2150037 GACGTGAGCCAGAATGCATGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACACCGAG 2149978 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||| || || ||||| | || ||||| Sbjct 2149977 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 2149918 Query 29997 CTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30056 |||| | ||||||| |||||||| ||||| | || || |||||||| || Sbjct 2149917 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGGTTCCAAGC 2149858 Query 30057 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 ||| ||||| || || || || || |||||| |||| Sbjct 2149857 TGACATTATGATTCGTCTATCATCAGGATTGTTCTTGAT 2149819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408613750439129