Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2 122 7e-23 seq6 98.7 8e-16 seq7 95.1 9e-15 seq1 93.3 3e-14 >seq2 Length=14066726 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||| | ||| || || ||| ||||| || |||||||||| Sbjct 7053379 CCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 7053438 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || ||||||||||| ||||| || || | ||| ||||||| ||| Sbjct 7053439 AGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 7053498 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| ||| ||| | | || || || ||| ||| Sbjct 7053499 ATCCCTTCCTTGTCCTGAATCTTAGCTTTAACATTGTCAATAGTATCAGAGCTCTCAACC 7053558 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| |||||||| ||||| || || ||||| |||||||| Sbjct 7053559 TCCAAAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || |||||||| || |||||||| | || | ||| Sbjct 7052932 AGACGCAACACAAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCCGCAAGTGTGCGA 7052991 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 | || || | ||| || || ||||| || |||| ||| || || | ||||| | ||||| Sbjct 7052992 CCATCCTCAAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATC-CCCTC 7053050 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || |||||| ||| ||| | | | | ||||| ||| ||||||| || Sbjct 7053051 CTTATCCTGAATCTTAGCTTTGACATTATCGATTGTGTCTGAACTCTCAACCTCCAAAGT 7053110 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || |||||||||||||| Sbjct 7053111 TATGGTCTTTCCTGTGAGGGTCTTCACAAAAATCTGCAT 7053149 >seq6 Length=16577294 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||||||| || ||| |||||| || || |||||||||| Sbjct 6990426 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCC 6990485 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | ||||||||||||||| || || | ||| ||||||| || Sbjct 6990486 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGG 6990545 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| || || ||||| ||| ||| | | | ||||| ||| ||| Sbjct 6990546 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTCTCAACC 6990605 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | ||| || ||||| |||||||| Sbjct 6990606 TCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATCTGCAT 6990652 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||||||| || ||| |||||| || || ||||| |||| | Sbjct 735337 CCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 735396 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | ||||||||||||||| || || | |||||| |||| || Sbjct 735397 AGTGTACGGCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGG 735456 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| || || | | || || || ||| ||| Sbjct 735457 ATACCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATAGTGTCAGAGCTCTCAACC 735516 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | ||| || ||||| |||||||| Sbjct 735517 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || || ||||||||| || |||||||||| || | || Sbjct 6990207 AGACGAAGCACGAGATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGCGAGGGTACGT 6990266 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 |||| || | ||| || |||||||| || |||| ||| || || | ||||| | || || Sbjct 6990267 CCGTCTTCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATC-CCTTC 6990325 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| ||||||| || || | | | | ||||| ||| ||||||| || Sbjct 6990326 CTTGTCTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGT 6990385 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || ||||||||||||||||| Sbjct 6990386 GATAGTCTTGCCGGTTAGGGTCTTTACAAAAATCTGCAT 6990424 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || || || ||||||||||| | || | ||| | || || Sbjct 8339413 ACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCCTCT 8339354 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || |||| ||| ||||||| || | ||||| || || Sbjct 8339353 AATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGGATTCCCTCTTTATCCTGG 8339294 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || ||||| ||| ||||| | || || ||||| Sbjct 8339293 ATCTTAGCCTTAACATTGTCAATAGTGTCTGAACTCTCAACCTCAAGGGTGATGGTTTTG 8339234 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || ||||| |||||||| Sbjct 8339233 CCAGTCAAAGTCTTCACAAAGATCTGCAT 8339205 >seq7 Length=17303919 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || ||||||||||| | || ||||| | || || | || ||||||||||| Sbjct 14231228 CTCTTTCTGGATATTGTAATCTGCAAGTGTTCGACCATCTTCGAGTTGTTTACCGGCAAA 14231287 Query 48635 TATCAGTCGCTGTTGATCC-GTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 || |||| ||| || ||| ||| || | || || ||||| |||||| || || Sbjct 14231288 GATTAGTCTCTGCTGGTCCGGTGTGATC-CCTTCTTTGTCTTGAATCTTGGCCTTCACGT 14231346 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | | || || ||| ||||| | || || ||||| ||||||||||| || | Sbjct 14231347 TATCAATCGTATCAGAGCTCTCGACCTCTAGAGTGATGGTTTTGCCCGTCAAAGTCTTGA 14231406 Query 48754 CAAAAATCTGCATC 48767 |||||||||||||| Sbjct 14231407 CAAAAATCTGCATC 14231420 >seq1 Length=19566579 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| ||||| || || || |||||| || ||||||||||||| Sbjct 10960128 CCACCCCTGAGCCTCAAGACCAAGTGAAGTGTCGACTCTTTCTGGATATTGTAATCAGCA 10960187 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || || | || || || ||||||||||| | ||||||||||| || Sbjct 10960188 AGTGTTCGACCATCTTCGAGTTGTTTCCCAGCAAATATCAGCCTCTGTTGATCCGGTGGT 10960247 Query 48660 ACGCCCTCCTTGTC 48673 | ||||| ||||| Sbjct 10960248 ATTCCCTCTTTGTC 10960261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934011210679