Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23]
773 sequences; 133,063,876 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 4e-18
>seq2
Length=14066726
Score = 107 bits (118), Expect = 4e-18
Identities = 280/416 (67%), Gaps = 16/416 (4%)
Strand=Plus/Minus
Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423
||||||||| | | ||| || || ||| || | | |||| |||||||| ||||||||
Sbjct 11475595 GATTCTTTCAAGGAGAACAAAGAACAATCCTGTGCTTATTGGAGAACCAGGAGTTGGTAA 11475536
Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483
|||| | ||||| || ||||||||| | || | || || ||||| || || | |
Sbjct 11475535 AACAGCTGTGGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTGCCCAATAGTCT 11475476
Query 150484 GAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542
| ||||| || ||| |||||||| | ||||||||||| ||||||| |||| || |
Sbjct 11475475 TACTGATGT-GAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCTGGTGCTAAATACC 11475417
Query 150543 GTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG- 150599
| || || || |||||| | || | | ||| | ||||| | | ||| || |
Sbjct 11475416 GAGGAGAGTTTGAAGAAAGATTGAAAGCTGTTT--TGAAAGAAGTTGAGGAAGCTGAAGG 11475359
Query 150600 --ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGG 150657
| || ||||| || || ||||| ||||| || | |||||||| ||| |
Sbjct 11475358 CAAAGTGATTCTCTTTATTGATGAGATCCACTTGGTTCTTGGTGCTGGGAAAACT---GA 11475302
Query 150658 CGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-T 150715
|| || ||||| ||| ||| |||| || || || || | ||| | |||| |
Sbjct 11475301 AGGGTCGATGGAT-GCAGCTAATCTGTTCAAGCCCATGTTAGCTAGAGGTCAGCTTCGAT 11475243
Query 150716 GTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771
|| || ||||| ||||| || || ||||| ||| | |||| |||||||| ||
Sbjct 11475242 GT-ATTGGTGCTACAACGCTTGAAGAGTATCGGAAATATGTTGAGAAAGATGCTGC 11475188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147579034192954
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |