Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq6 342 6e-89 >seq6 Length=16577294 Score = 342 bits (378), Expect = 6e-89 Identities = 503/707 (71%), Gaps = 4/707 (1%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || ||||| |||||||| || |||||||| || | || ||| Sbjct 1968794 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCT-CTT 1968736 Query 164679 CCCAC-TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTG 164737 ||| ||| ||| | || | || |||||| | || || ||| | ||||| || || Sbjct 1968735 CCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATG 1968676 Query 164738 GTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGT 164797 ||| || ||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 1968675 GTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGT 1968616 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || |||||| || | | | |||||| | | |||| ||||||||||| | || Sbjct 1968615 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACA 1968556 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || |||| || ||||| ||| | || || || ||| ||| || ||||||||||| Sbjct 1968555 AGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCACGG 1968496 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTA 164976 || ||||| |||| ||||| ||| | || |||||||| || || || ||| | | Sbjct 1968495 CGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGATCTGTTCAAT- 1968437 Query 164977 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 165036 | || ||||| ||||| || || ||||||||||| |||||||||||||| ||||||| Sbjct 1968436 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCC 1968377 Query 165037 TTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 | || || ||||| ||||| || ||||||| || || || ||||| || || || | Sbjct 1968376 TAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTA 1968317 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | ||| ||||| | | || | ||||| || || || ||||| | ||||| || |||| Sbjct 1968316 TATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 1968257 Query 165157 TGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAG 165216 ||||||| || || ||| | |||| | || |||||| ||||||||||| | || | Sbjct 1968256 TGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTG 1968197 Query 165217 TTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGA 165276 | |||||||| |||| || ||||| || |||||||| || || ||| | | | Sbjct 1968196 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 1968137 Query 165277 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 165323 | || | ||||| |||||||| |||||||| || |||||||| ||| Sbjct 1968136 CTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563204157987240