Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5 109 1e-18 >seq5 Length=13709650 Score = 109 bits (120), Expect = 1e-18 Identities = 429/665 (65%), Gaps = 21/665 (3%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAG-- 48097 ||||||| |||| |||| ||| || || | || ||| ||| ||||| |||| | Sbjct 2138099 AAACTCCCTCTCGATCTCCACCGCGTCGCATACGATCGACTTCACGCG---CTCTTCGCT 2138155 Query 48098 --GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTT 48155 | || ||| | || || || |||| | ||| || ||||| | ||| ||||||| Sbjct 2138156 AAGCTTCGTTTTG-AGAAGCGTG---TAGATAAGGCACGCGAAGTCGCAGTGTAAGCCTT 2138211 Query 48156 CGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGA 48215 |||| || ||| | |||| ||||| | |||||||||| || | | || | Sbjct 2138212 CGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTCTTAA 2138271 Query 48216 GCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGG 48275 ||||||| || | ||| || ||||||||||| || || || ||||| || Sbjct 2138272 GCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAAGCAA 2138331 Query 48276 TGAGCCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 || | || | || | | | || ||| |||||| | |||||| | || Sbjct 2138332 CGATTCGTTCAGCAAAGGTCTGAGATCC-GTC---GATCCATTTCATCGCCCACTGAGCT 2138387 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCG 48394 |||||| || ||| || |||||||| || || |||||||| | | | ||| Sbjct 2138388 TTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGGAAGAGATGGTCTCTCTCTTTGTTA 2138447 Query 48395 TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCG 48454 || | || ||| ||| || ||||||||||| || | |||||| || ||| Sbjct 2138448 TCTTTGATGTAAGTATCGAGAAGAAGACTATACATCTCAGAATGAATATTCTCAATCGCG 2138507 Query 48455 ATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCC 48514 |||||||| |||||||| || | ||||| | || || || || | ||| | Sbjct 2138508 ATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGGACATCGGACATGAA-CCGAGA 2138566 Query 48515 AGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 ||| |||||||| || || || || || ||||| ||||| || ||||| ||||| | Sbjct 2138567 AGCGAGATTCTCTAAAACGATTCCGTCGGATGCAGCGAAGAAAGCGAGGACGTGTTTGAT 2138626 Query 48574 GAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTC 48630 ||| || || ||| || | ||||| || ||| | | ||||| || || Sbjct 2138627 GAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCCAATCGCGGTTGTCTTGTGAGAGATC 2138686 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGG 48690 |||||||| | ||||||||||| || ||||| |||||||| |||| || | || Sbjct 2138687 TACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGG 2138746 Query 48691 ATAGT 48695 |||| Sbjct 2138747 GTAGT 2138751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931523799064320