Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 2e-15 >seq5 Length=13709650 Score = 98.7 bits (108), Expect = 2e-15 Identities = 296/441 (67%), Gaps = 22/441 (5%) Strand=Plus/Minus Query 25689 TTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT 25748 |||||||||||||||||| || || || ||| | || |||||| ||||| ||||| Sbjct 2138525 TTTCTACGGTTTCCAGATCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTTCTTCT 2138466 Query 25749 -GATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807 ||| || ||||| | ||| | |||||||| | || || | || || ||| | Sbjct 2138465 CGAT-ACTTACATCAAAGATAACAAAGAGAGAGACCATCTCTTCCGCGCGATTGAGACGA 2138407 Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC-T 25866 | || || || || ||| || | |||||| ||||| |||||| | | || | | Sbjct 2138406 TTCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATC----GACGGATCTCAG 2138351 Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTC 25925 || |||| || || | || || || ||| ||| || || ||||| ||| ||| | Sbjct 2138350 ACCTTTGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGC 2138291 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCC 25983 | ||| ||||||||||||| ||| | | | |||| |||||| ||| | ||||| || Sbjct 2138290 TTCTGC-TCCATCTTCTGGCTTAAG-AAACGAGGACTCATGCCTGGG-TTAACTTTCTCA 2138234 Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 ||||| | ||| | ||||| || | ||| | || || || ||||| |||||||| Sbjct 2138233 AACGAATTGATCTCTCGAGACGAAGGCTTACACTGCGACTTCGCGTGCCTTATCTACACG 2138174 Query 26044 GGCCACTTGCTC--CACAAACCTTCTC-AAGAGACCGTCTACAGTATCATCAAAGAGGCT 26100 ||| ||| || || ||| | ||||| ||| | ||| | || || Sbjct 2138173 -----CTT-CTCAAAACGAAGCTTAGCGAAGAGCGCGTGAAGTCGATCGTATGCGACGCG 2138120 Query 26101 GTGGAGATCGAGAAGGAGTTT 26121 ||||||||||||| ||||||| Sbjct 2138119 GTGGAGATCGAGAGGGAGTTT 2138099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928835825037120