Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq6 419 2e-112 >seq6 Length=16577294 Score = 419 bits (464), Expect = 2e-112 Identities = 523/717 (73%), Gaps = 0/717 (0%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || ||||| |||||||| ||||||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || || || ||| ||| | || | || || ||| | || || || || ||| Sbjct 1968746 CTATTGCTCTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1968687 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || ||||| ||||| ||| | || ||| || | || ||| ||||| | Sbjct 1968686 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 1968627 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 1968626 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 1968567 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 ||||| | || |||||||| || ||| || | || || || ||||||||||| Sbjct 1968566 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTT 1968507 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || |||||||| || ||||| ||||| || ||||||||||| |||||||| || || || Sbjct 1968506 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGA 1968447 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | || | | |||||||| ||||| ||||| || ||||| || |||||||||||||| Sbjct 1968446 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTT 1968387 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 ||| ||||| || |||||||| || || ||| |||||||||||||||| ||||| || Sbjct 1968386 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 1968327 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || ||||| || || || ||| ||||||| |||| || |||||||||||||| | || Sbjct 1968326 GTAGCGGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 1968267 Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414 || || |||||||||||||| |||||| ||||||| | ||| || |||| || || || Sbjct 1968266 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 1968207 Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474 || | ||||||||||| || | | | ||||||| || ||||| || ||| ||| Sbjct 1968206 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 1968147 Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGG 10531 ||| | ||||||| ||||| || ||||| ||||| || |||||||| || ||| Sbjct 1968146 TTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516475009512000