Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 seq6 89.7 4e-13 >seq2 Length=14066726 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || ||||| || |||||| || || ||| Sbjct 7052921 ATGCAAATCTTTGTGAAAACATTGACAGGTAAGACTATTACCTTGGAGGTTGAGAGCTCA 7052862 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || || ||||||||||| | || ||| || Sbjct 7052861 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAAGAGGGGATCCCACCAGACCAG 7052802 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| |||||||| || ||||| | || ||| | ||| |||| ||||||||| Sbjct 7052801 CAGAGACTCATCTTTGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCTGATTATAAC 7052742 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| ||||| ||| |||| Sbjct 7052741 ATCCAAAAGGAATCAACTCTCCACTTGGT 7052713 >seq6 Length=16577294 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || |||||||| ||| || || |||| Sbjct 8339205 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACCATCACCCTTGAGGTTGAGAGTTCA 8339264 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || ||| || ||||||||| | || ||||| Sbjct 8339265 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 8339324 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||||||||| || |||||||| || ||| | || | || ||||| || Sbjct 8339325 CAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTTGCGGATTACAAT 8339384 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || ||||| || || ||| |||| Sbjct 8339385 ATCCAGAAGGAATCAACCCTTCACTTGGT 8339413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425400792287967