Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq6 369 4e-97 seq2 120 3e-22 >seq6 Length=16577294 Score = 369 bits (408), Expect = 4e-97 Identities = 514/718 (72%), Gaps = 2/718 (0%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||| ||||||||||| || |||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || || || ||| ||| | ||| | ||||||||| | || || || || || Sbjct 1968746 CTATTGCTCTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1968687 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT 162296 || || ||||||||||| ||| | || ||||||||| | || ||| || ||| | Sbjct 1968686 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 1968627 Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356 || || |||||||||||||| || | | | | |||||| | || | || |||||| Sbjct 1968626 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 1968567 Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416 ||||| | ||||| || || | || ||||| ||| | || || || ||| ||||||| Sbjct 1968566 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTT 1968507 Query 162417 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 162476 || |||||||| || || ||| | |||||||| ||| | || ||||||||||| || ||| Sbjct 1968506 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGA 1968447 Query 162477 -CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGT 162535 || || | | || ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 1968446 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGT 1968388 Query 162536 TAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGG 162595 | ||| || || || ||||| | || ||||| |||||||| || || || || Sbjct 1968387 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 1968328 Query 162596 GGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAA 162655 || || || || || |||||| | ||||| |||||||||| ||||| ||||| | || Sbjct 1968327 TGTAGCGGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 1968268 Query 162656 TCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCA 162715 || ||||| |||||||| || || ||| | || || | || |||| | |||||||| Sbjct 1968267 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 1968208 Query 162716 TGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGC 162775 ||| | || || |||||||| | | |||||||| || ||||| || || || Sbjct 1968207 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 1968148 Query 162776 ATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 ||| || | || || | |||||||| ||||| ||||| || || |||||||| ||| Sbjct 1968147 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 >seq2 Length=14066726 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 |||||| |||||| ||| | |||||||| ||||||||||| || |||| | ||| Sbjct 1809308 GTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTA 1809249 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||||||| ||||| || ||| | || ||||| | || || Sbjct 1809248 CTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGA 1809189 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| |||||| ||||| || ||||| || || ||| | || || |||| || || Sbjct 1809188 CCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTG 1809129 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 || |||||||||| |||| | ||||| || |||| ||||| || Sbjct 1809128 TGCCGCTTATCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 1809078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547741907392680