Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq6 370 1e-97 seq2 102 1e-16 >seq6 Length=16577294 Score = 370 bits (410), Expect = 1e-97 Identities = 515/720 (72%), Gaps = 6/720 (1%) Strand=Plus/Plus Query 102006 CCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGC 102065 ||| || ||||| || || |||||||||||||| ||||| |||| || | | || || Sbjct 1968090 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 1968149 Query 102066 TTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTG 102125 ||| || ||||| ||||||||||||| | | ||| || || ||||| |||| || Sbjct 1968150 ACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATG 1968209 Query 102126 GATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTT 102185 || || | ||||| || | ||||| | ||| || || ||||||||||| |||||||| Sbjct 1968210 AATAGCGCATAGCAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTT 1968269 Query 102186 GAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACC 102245 | ||||| ||||| || || || | ||||| | ||||| |||||| || || ||||| Sbjct 1968270 CAATGTCCAATTATGAAACCCTTGGAAAAAGAGAATGAATCGAAATATAGCCGCTACACC 1968329 Query 102246 AAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGAC 102305 ||| |||||||||||||||| || || || || ||||| || || || ||| || Sbjct 1968330 AAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAAC 1968389 Query 102306 AAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCT 102365 ||||||||| || || |||||||| || || ||||| || || || | | || | | Sbjct 1968390 AAAAACAGCAATGGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCG 1968449 Query 102366 AGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCAC 102425 ||| | || || ||||| | ||| ||||| || | || || || ||||||||||| || Sbjct 1968450 AGCAAGTTCAAACTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAAC 1968509 Query 102426 AAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACC 102485 ||||||||| || || || | ||| ||| | ||||||||||| ||||||||||| Sbjct 1968510 AAAAGCCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACC 1968569 Query 102486 CCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAG 102545 ||| |||| | | |||||| | | | | |||||| || || || ||||| || | Sbjct 1968570 CCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAA 1968629 Query 102546 GAAATTAGCACCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGC 102602 ||||| |||||| | | ||||| || | || || |||||||| ||||| | Sbjct 1968630 AAAATTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTTAC 1968686 Query 102603 AAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAG 102662 ||| || || || || | ||| ||||| | |||| ||| ||| || || || | ||| Sbjct 1968687 AAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGGAAGAGCAATAG 1968746 Query 102663 TCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 ||||||||||| ||||| || ||||| || | | ||||||||||| || ||||| Sbjct 1968747 ACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 1968806 >seq2 Length=14066726 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| || || || || || | ||||| |||||||| ||||| || | || || ||| Sbjct 1809105 ACATCAGAGGTAGGATAAGCGGCACAGGTGAGAACAAACCCTGCATCAATCTGCTCATCA 1809164 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || || || || || || || |||| || || ||| ||||||||||| | Sbjct 1809165 TCAAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCAGCACAGCTC 1809224 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 ||||| | ||||||||| || || ||||||| ||| | || ||||| ||||||||||| Sbjct 1809225 GAACAAGAACCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCAGCGTCA 1809284 Query 102992 AGAA 102995 |||| Sbjct 1809285 AGAA 1809288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633507478674840