Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq6 248 1e-60 seq7 123 3e-23 seq4 104 3e-17 >seq6 Length=16577294 Score = 248 bits (274), Expect = 1e-60 Identities = 434/632 (69%), Gaps = 0/632 (0%) Strand=Plus/Plus Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331 |||||| | || || || | || || ||||||||||| || ||||| | || | || Sbjct 1968175 TCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATAGCGCATAGCAGAGCCGCGCCC 1968234 Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391 |||| || || || |||||||| |||||||| |||||||| || || || ||||| Sbjct 1968235 AGTACACCAGCGACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGG 1968294 Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTG 123451 | || | || | ||||| || || || ||||| || || || |||||||||| Sbjct 1968295 AAAAAGAGAATGAATCGAAATATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCA 1968354 Query 123452 TGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAAT 123511 |||||||||||||| || || |||| | || || || || | |||||||| Sbjct 1968355 GATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAAACAGCAATGGGACCAGAGAAT 1968414 Query 123512 GCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATG 123571 |||| ||| || ||||||| | ||| || || | ||||| || | | ||| Sbjct 1968415 GCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCAAGTTCAAACTGACGTAACATA 1968474 Query 123572 AAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGT 123631 |||||||| | | | || | || || | || ||||| ||| ||||| || | ||| Sbjct 1968475 AAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAAAGCCCACAGACCACCTAATTGA 1968534 Query 123632 AACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCC 123691 |||||||| || ||||||||||||||| ||||| || |||| | | ||| | Sbjct 1968535 CACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCACAGTAACAACAAAGAATGCGCT 1968594 Query 123692 ATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAA 123751 | | | |||| || || ||||| || ||||| || || || || | ||| ||| Sbjct 1968595 AAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAA 1968654 Query 123752 GATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCG 123811 || | ||||| ||||||||||| || || ||||| || ||| ||||||||| || Sbjct 1968655 CTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCT 1968714 Query 123812 ATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGA 123871 | | | ||| |||||||| | || || ||||||||||| |||| || || || || Sbjct 1968715 AAAGCGAAATAGGCACAAGGGAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGG 1968774 Query 123872 TCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 || ||| ||||||||| || | || |||||| Sbjct 1968775 TCCCTCCGTAACCAGTCATCCATAATATCAAA 1968806 >seq7 Length=17303919 Score = 123 bits (136), Expect = 3e-23 Identities = 157/213 (74%), Gaps = 16/213 (8%) Strand=Plus/Minus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || |||||||| || ||||||||||| |||||||| | Sbjct 2779264 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCCCTCCTAATATGCTGTTCTCTAGTCT 2779205 Query 139375 GTAGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG-------TCCACTGACTGACCTAC 139426 | | || | || |||| | |||| ||| ||| | |||| || ||| | Sbjct 2779204 GCATAGCCA-----TACGCAGAGCTTGCTTTC-CTGAAGAATCTACACTAAC--ACCGAT 2779153 Query 139427 AATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGG 139486 ||| || || || ||| |||||||||||| | || || || ||||| || |||||||| Sbjct 2779152 AATCCTCCCTGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAACGCGGCATGAGG 2779093 Query 139487 ACCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 ||| || || ||||| |||| |||||||||||| Sbjct 2779092 ACCACCATAACCCATGGGAACACCAAACCTTTG 2779060 Score = 102 bits (112), Expect = 9e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | |||||| |||||||| ||||| | |||||||| ||||||||||| Sbjct 2781122 AAATGGTGCCAAATGTTTCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATG 2781063 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| |||||||| ||||| || ||| Sbjct 2781062 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGACACACATCGGCTCCA 2781014 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || ||||| ||||||| | || || ||||| | || || | || Sbjct 2778723 CATAGCCTCGGCAGCCGCAGTCCCTTCATCGAGGAGCGAAGCGTTCGACATGGGAAGCCC 2778664 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || ||||||| ||| ||| |||||| | | ||| | | |||||||| || Sbjct 2778663 CGTGAGGTCGGTGATGACCGTCTGGAAATTGAGCAGCGATTCGAGACGACCCTGAGAGAT 2778604 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCG 140035 |||||||||||| |||||||| ||||||||| || ||||| | || ||| || Sbjct 2778603 CTCAGCTTGATAAGGAGTGTACTGAGTGTACCAAGCTGGGTTCTCCATAATGTTACG 2778547 >seq4 Length=14994381 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| || || ||||| || ||||||| | | || ||||| | || ||||| || Sbjct 2877944 CATTGCTTCCGCAGCTGCGGTACCTTCATCGAGCAACGAAGCGTTCGACATAGGTAAACC 2878003 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || || || | ||| ||| |||| | |||| || | ||||| ||||| || Sbjct 2878004 AGTAAGATCAGTAATAACCGTCTGGAAATTAAGCAAAGACTCAAGCCTTCCTTGAGAAAT 2878063 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| ||||| || || ||||||| ||||||||| Sbjct 2878064 CTCAGCTTGATAAGGAGTATACTGAGTATACCAACCAGGATTCTC 2878108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || |||||||| ||||| ||||| || || | |||||||| || ||||| || Sbjct 2877405 TGAGCAGTACAGATGTTGCTGGTAGCTTTATCCCTGCGGATATGCTGTTCCCTAGTCTGC 2877464 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | | || | || || || |||| || ||| | ||| || | Sbjct 2877465 ATAGCCATACGCAAAGCTTGTTTTCCCAAAGAATCAACACTAAC--ACCAATAATCCTCC 2877522 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| | |||||||||| | || || || ||||| |||||||||||||| |||| Sbjct 2877523 CAGGCATCATCCTCTTATACTCTTGTGAAGTAGCCAAGAAAGCAGCATGAGGACCACCGT 2877582 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTA-CCTACAGCAATATC 139540 | ||||| || | ||||||||| || | | | || ||| ||||||| Sbjct 2877583 AACCCATCGGTACACCAAACCTCTG-AGCCGATCCAACAACAATATC 2877628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578992805427960