Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq6 408 6e-109 seq1 125 1e-23 >seq6 Length=16577294 Score = 408 bits (452), Expect = 6e-109 Identities = 525/719 (73%), Gaps = 4/719 (1%) Strand=Plus/Plus Query 23687 CCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGC 23746 |||||| || || || || ||||| ||||| || || || | ||||| | | || || Sbjct 1968090 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 1968149 Query 23747 TTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATG 23806 || || ||||| || ||||||||| | | ||||| || |||||| | ||||| Sbjct 1968150 ACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATG 1968209 Query 23807 AATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTT 23866 |||||| | || || || | ||||||| |||||| |||||||||||||| || ||||| Sbjct 1968210 AATAGCGCATAGCAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTT 1968269 Query 23867 GAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACC 23926 | ||||| |||||||| || |||| ||||||| ||| | || || ||||| ||||| Sbjct 1968270 CAATGTCCAATTATGAAACCCTTGGAAAAAGAGAATGAATCGAAATATAGCCGCTACACC 1968329 Query 23927 GAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACAC 23986 ||||| ||||||||||||||| || || || | ||||| || ||||| ||||| || Sbjct 1968330 AAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAAC 1968389 Query 23987 GAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-C 24045 || |||||||| |||||||| || || || ||||| || || || | | || ||| | Sbjct 1968390 AAAAACAGCAATGGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAA-CAGATC 1968448 Query 24046 GTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAA 24105 | || ||||||||||||||||||||||||||||| | ||| || || ||||||||||||| Sbjct 1968449 GAGCAAGTTCAAACTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAA 1968508 Query 24106 CAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGAC 24165 |||| | ||| || || || | ||| ||| || ||| || ||||| | ||||||| Sbjct 1968509 CAAAAGCCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGAC 1968568 Query 24166 CCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAA 24225 |||| |||| | | |||||| | | | | |||||| || || || || || || | Sbjct 1968569 CCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTA 1968628 Query 24226 GAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAA 24285 ||| || ||| || | |||||||||||| | |||||| || ||||| || |||| Sbjct 1968629 AAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAA 1968688 Query 24286 AAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA-GTGGGAAGAAGTAGGAGT 24344 | | ||| || || | |||||| || | || | ||| ||| |||||| || | || Sbjct 1968689 AGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGGAAG-AGCAATAGA 1968747 Query 24345 CCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 ||||||||||| ||||| || ||||| |||| | |||||| |||| || ||||| Sbjct 1968748 CCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 1968806 >seq1 Length=19566579 Score = 125 bits (138), Expect = 1e-23 Identities = 182/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||| ||||| ||| | || ||| ||||| ||||||||||| || || || || Sbjct 6188834 GCAGGAAGCACATGGGAATTCTCCGGGTGGAAATTGTCATTTGGACCGTAGAGATTGGTG 6188893 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| ||||| |||| || || ||| | ||| || ||||||||||| || Sbjct 6188894 GGCATACCGGAGATGGCATCCCATTGATGCTGAAGCCTGTAAGCTTGACACATCTTAATC 6188953 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 || |||||||| ||||| || || | || ||| | ||||||||||||||| | | ||| Sbjct 6188954 CCTGCAATCTTGGCAATGGCGTACCACTCGTTAGTCGGTTCAAGAGGACCAGTGAGAAGA 6189013 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 ||| ||| ||||| | ||||| || |||||||| || || || || || Sbjct 6189014 GCGGATTCAGGAATCGGTTGAGGAGCGAATTTGGGGTAAATGCAAGATGAGCCGAGGAAG 6189073 Query 47226 AAAAGTTTCTTAACACC 47242 | |||||||| ||||| Sbjct 6189074 AGGAGTTTCTTCACACC 6189090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665487969660360