Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 149 7e-31 seq1 136 5e-27 seq8 104 3e-17 seq5 96.9 4e-15 >seq4 Length=14994381 Score = 149 bits (164), Expect = 7e-31 Identities = 282/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| |||||||||||| || |||||||||||||||| ||| Sbjct 7883679 GTGGAGTTTCTGAAGAAACCCGAGAGATTCACTGCGGTTGGTGCCAAGATCCCCAAAGGT 7883738 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 7883739 GTTCTCCTGATTGGTCCTCCTGGTACCGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGT 7883798 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | ||||| ||||||||||| ||| Sbjct 7883799 GAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 7883858 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| ||| || || ||||| || | | ||| || ||| || || ||| Sbjct 7883859 GTCGGTGCCTCAAGAGTCCGTGATCTTTTCAAGAAAGCCAAGGAGAATGCTCCTTGCATT 7883918 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| || ||||| || |||| |||| | | | || |||| | Sbjct 7883919 GTCTTTGTAGATGAAATAGATGCTGTCGGCAGGCAAAGAGGGACCGGAATTGGT---GGA 7883975 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 7883976 GGTAATGATGAAAGAGAACAGACCCTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 7884035 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | | ||||| || | || |||| || || ||| | | || || |||||| Sbjct 7884036 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGAT 7884089 >seq1 Length=19566579 Score = 136 bits (150), Expect = 5e-27 Identities = 201/281 (72%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||||||| | ||| | || | || || ||| || || || || Sbjct 17296427 GCCTGGTACGGGTAAGACCCTCTTGGCCAGGGCTGTAGCTGGGGAAGCAGGAGTACCGTT 17296368 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| | ||| || | ||||||||| | || || ||||||||||| || || Sbjct 17296367 CTTCTCTTGCGCGGCCTCAGAGTTTGTGGAGCTTTTCGTGGGTGTGGGTGCATCTAGAGT 17296308 Query 175434 TCGCGATCTCTTTGAAATCGC--CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAG 175491 | | ||| | || || | || ||||| | || |||||||| |||||||||||| Sbjct 17296307 TAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGCC--CCTTGTATTGTATTCATTGATGAG 17296250 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAG 175549 ||||| || ||||| | ||| | | ||||| ||| | | || |||||| ||||||| Sbjct 17296249 ATTGACGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAG 17296192 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||| || |||||||| | | || ||||||||||| ||| Sbjct 17296191 AACAGACCATTAATCAGTTGTTGACAGAGATGGATGGATTT 17296151 Score = 100 bits (110), Expect = 3e-16 Identities = 273/415 (66%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | | || ||| ||| ||||||| || Sbjct 2024008 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTTACTGCGGTTGGAGCCCGGATCCCCAAGGGT 2023949 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || ||| || || ||| Sbjct 2023948 GTTCTCCTTATAGGTCCTCCTGGTACTGGTAAAACCCTGTTGGCAAAAGCTATTGCTGGT 2023889 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||||| Sbjct 2023888 GAAGCTGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTTG 2023831 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| |||||| || ||||| || ||| || || ||| || || | Sbjct 2023830 GTGTTGGTGCATCAAGGGTCCGTGATCTTTTCAAAAAAGCAAAAGAGAATGCTCCGTGCA 2023771 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 | || || | ||||| || ||||| || || | |||| | | | || |||| Sbjct 2023770 TAGTTTTTGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 2023714 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || || || ||||||||||| |||| Sbjct 2023713 GAGGTAATGATGAAAGAGAACAGACCCTTAATCAGCTTCTGACTGAGATGGATGGTTTTG 2023654 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | | ||||| || | || |||| || || || | | || || ||||| Sbjct 2023653 AGGGTAACACTGGTGTTATTGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGA 2023599 >seq8 Length=13324298 Score = 104 bits (114), Expect = 3e-17 Identities = 193/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || |||||||| ||||| || | || |||| | || || ||| | || || ||| Sbjct 3556345 CCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCTGGAGTGCCGTTC 3556286 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | || |||| | | ||||| ||| | ||||||||||||||||| || ||| Sbjct 3556285 TTTTCTTGTGCTGCTTCGGAGTTTGTTGAGCTTTTTGTTGGTGTGGGTGCGTCTAGAGTT 3556226 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || || ||||| || ||||||||||| Sbjct 3556225 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCT-CCTTGCATTGTGTTTATTGATGAGAT 3556167 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| || || | |||| | | ||||| ||| | | | |||||| ||||| ||| Sbjct 3556166 TGATGCTGTTGGTAGGCAAAGAGGAGCTGGGATGGGAGGT--GGAAATGATGAGAGGGAA 3556109 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || |||||||| || | || ||||||||||| ||| Sbjct 3556108 CAGACGATTAATCAGCTTTTGACTGAGATGGATGGATTT 3556070 Score = 102 bits (112), Expect = 1e-16 Identities = 232/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 177538 CCAACCTCTTTGAAGCACATTTCAACAAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGC 177596 ||||| | ||||| ||| || | ||||| |||| |||| ||||| ||| | || || Sbjct 13197847 CCAACGTACTTGAAAGACACCTCCAGAAACT-CCTCGACAGTGTGTGATTCCTCAGTTGC 13197905 Query 177597 GACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTC 177656 || || || ||||| | | || || || ||||| |||||||| || || || ||||| Sbjct 13197906 CACGACGTAGTCATCTGGTTTCTCCTGCTGCAGCATCAGCCACATTGCCTCGACGTAGTC 13197965 Query 177657 -CTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCT 177715 | || | | ||||||||||| | ||| | | || ||||| | || || ||| Sbjct 13197966 TCCTGCGAAG-CCCCAGTCTCTTGAAGCCTGTATATTTCCGAGG---AAGAGCTTCGTCT 13198021 Query 177716 CACCTTTCACAATTTGTTTGACGCCATC-----AGTAATCTTCTTTGTGACAAAGTCGGC 177770 | || | ||| | ||| ||| || ||| || || |||| | Sbjct 13198022 G--CAATCCGACCTTGATCCTTCCCAAAGCCCGAGTGATTTTCCGAGTAACGAAGTTCTC 13198079 Query 177771 ACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGA 177830 ||| || | ||||||||||||||||||||||| ||| |||||| |||| |||||||| Sbjct 13198080 ACCCCGGCGTGGTGATTCGTGGTTGAAGAGGATCCCGTTGCAGGCGTACAGACCATAGGC 13198139 Query 177831 TTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGA 177872 |||||||| || | | |||||||||||| ||||||| Sbjct 13198140 CTCTCGGTAGTTGACGGTGTACCAGTGAGCGGCGCATTTGGA 13198181 >seq5 Length=13709650 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||| || | ||||| ||||||||| | ||| | |||| |||| || || || Sbjct 2138393 GAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGA---TCTCAGACCTTTGCTGAACG 2138337 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | |||| || || ||||| || ||||||||||||||||| |||||| | || | Sbjct 2138336 AATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCCATCTT 2138277 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | ||||| || || |||||||| || || |||||||| ||| | || || || Sbjct 2138276 CTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCG 2138217 Query 65202 AGATGAGGG 65210 ||| || || Sbjct 2138216 AGACGAAGG 2138208 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/225 (69%), Gaps = 11/225 (5%) Strand=Plus/Plus Query 177745 GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATT 177804 || |||||| | || || |||| ||||||| | ||||| ||||| ||||| | |||| Sbjct 9098266 GTGATCTTCCTGGTCACGAAGTTCTCACCTCGGCGAGGTGACTCGTGATTGAACAAGATT 9098325 Query 177805 CCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTGAGCG 177861 ||| ||||| | | ||| |||| |||||||||| ||||| | ||| ||||| Sbjct 9098326 CCGTTACAGGCGAAGAGACCGTAGGCTTCTCGGTAA---TTGACAGTGTACCAATGAGCA 9098382 Query 177862 GCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGA 177921 || ||||||| || | || |||| || | || || ||| ||| | |||||| Sbjct 9098383 GCGCATTTGGAAACCGCGTAAGGAGATCTGGGATGAAACGGCGTCGTCTCGGATTGTGGG 9098442 Query 177922 GTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 | ||| || | || ||||||||||| | | ||||||||| Sbjct 9098443 G----GAGGAGTTGATCCGAACATCTCCGAGGATCCGGCTTGGTA 9098483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563835646240