Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq6 361 6e-95 >seq6 Length=16577294 Score = 361 bits (400), Expect = 6e-95 Identities = 515/720 (72%), Gaps = 6/720 (1%) Strand=Plus/Minus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| || || |||||||| || |||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || || || ||| ||| | ||| | || |||||| | || || || || || Sbjct 1968746 CTATTGCTCTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1968687 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTC 167191 || || ||||||||||||||| | || || | ||| | || ||| || ||| Sbjct 1968686 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCC--TATTTAGAAGGTTGCAATTTTT 1968629 Query 167192 TTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGG 167251 | || || |||||| |||||| || || | | | |||||||| | | || |||| Sbjct 1968628 TAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGG 1968569 Query 167252 GTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTG 167311 |||||||| | ||||| ||||| | ||| ||| | || || || |||||||||| Sbjct 1968568 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTG 1968509 Query 167312 TGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTC 167371 | || |||||||| || || || | || ||||| ||| | || |||||||||||||||| Sbjct 1968508 TTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTC 1968449 Query 167372 GC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTC 167430 | ||| | | | || || || ||||| || || ||||||||||| |||||||| || Sbjct 1968448 GATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTT 1968390 Query 167431 GTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTC 167490 ||| || ||||| | ||||| || |||||| | ||||||||||| || || Sbjct 1968389 GTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 1968330 Query 167491 GGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTG 167550 || || || || || || |||||| | ||||| ||||||| || || || |||||| || Sbjct 1968329 GGTGTAGCGGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 1968270 Query 167551 AATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATC 167610 || ||||||||||||||||| || || ||| | ||||| | || |||| | || || Sbjct 1968269 AACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATT 1968210 Query 167611 CATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAG 167670 ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || || Sbjct 1968209 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 1968150 Query 167671 GCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGG 167730 || || | | ||||| | ||||| |||||||||||||| || || ||||| || ||| Sbjct 1968149 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561242576941200