Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq6 394 1e-104 >seq6 Length=16577294 Score = 394 bits (436), Expect = 1e-104 Identities = 515/709 (73%), Gaps = 8/709 (1%) Strand=Plus/Plus Query 66887 CCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGC 66946 ||| |||||||| || || |||||||| ||||||||||| ||||||| | || || || Sbjct 1968090 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 1968149 Query 66947 TTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATG 67006 ||| || ||||| |||||||||||| | | |||||| ||||| ||| ||||||| Sbjct 1968150 ACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATG 1968209 Query 67007 AATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTT 67066 ||| || | |||| || | ||||| | ||| || || |||||||||||||| ||||| Sbjct 1968210 AATAGCGCATAGCAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTT 1968269 Query 67067 CAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCC 67126 ||| ||||| ||||| || ||||| | ||||||| ||||||||| || || | || || Sbjct 1968270 CAATGTCCAATTATGAAACCCTTGGAAAAAGAGAATGAATCGAAATATAGCCGCTACACC 1968329 Query 67127 GAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAAC 67186 ||| || || || ||||||| |||||||| || || || || || |||||| ||| Sbjct 1968330 AAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAAC 1968389 Query 67187 AAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA-C 67245 ||||||||| || ||||||||||| || || ||||| || || || | | || ||| | Sbjct 1968390 AAAAACAGCAATGGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATC 1968448 Query 67246 GTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCCA 67305 | || ||||||||||| || | ||| ||||| |||| |||||||| |||||||| || | Sbjct 1968449 GAGCAAGTTCAAACTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAA 1968508 Query 67306 CAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGAC 67365 ||||| ||| || || || | ||| ||| || ||||| || || | ||||||| Sbjct 1968509 CAAAAGCCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGAC 1968568 Query 67366 CCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTGA 67425 |||| |||| | | |||||| | | | || |||||| || || || || || || | Sbjct 1968569 CCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTA 1968628 Query 67426 GAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGA 67482 |||||| ||| || | || ||||| || | ||| ||||| ||||| || | Sbjct 1968629 AAAAATTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTTA 1968685 Query 67483 CAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTA 67542 |||| || ||||| || | ||| || || | || | ||| ||| || || || | || Sbjct 1968686 CAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGGAAGAGCAATA 1968745 Query 67543 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 | ||||||||||| ||||| || ||||| || | | ||||||||| Sbjct 1968746 GACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATC 1968794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572048872524360