Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 5e-15 seq1 96.9 5e-15 seq2 91.5 2e-13 seq7 87.8 3e-12 >seq6 Length=16577294 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||| || || || || | || ||||| ||| Sbjct 6991108 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 6991049 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || || || |||||||| ||||| || || Sbjct 6991048 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 6990989 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||||| ||||| |||||| | | || || | ||||| || Sbjct 6990988 CAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACAAC 6990929 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || ||||| || | | |||||||| ||| Sbjct 6990928 ATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTTAAGAGGTGGT 6990881 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||| || || || || | || || || ||| Sbjct 8338977 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 8339036 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || || |||||||| ||||| || || Sbjct 8339037 GACACCATTGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 8339096 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || ||||| ||||| |||||| | | || || ||||||| || Sbjct 8339097 CAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACCTTGGCAGATTACAAC 8339156 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || |||||||| || Sbjct 8339157 ATCCAGAAAGAGTCAACCCTTCATTTGGT 8339185 >seq1 Length=19566579 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || || | || || ||||| ||||| |||||||||| ||| Sbjct 19036986 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 19037045 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || ||||| || ||||| || | ||||| ||| Sbjct 19037046 GACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCAACCAGACCAA 19037105 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || ||||||||||||||| |||| | |||||||| || Sbjct 19037106 CAGAGACTCATATTTGCAGGCAAGCAGCTCGAAGATGGTCGAACGCTTTCAGATTACAAC 19037165 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || ||||| | || ||||| Sbjct 19037166 ATCCAGAAAGAATCAACCCTTCA 19037188 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || || ||||| || || || ||||| || ||| Sbjct 19037214 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAAACCATAACTTTGGAAGTTGAGAGCTCT 19037273 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || ||||| || ||||| ||| | ||||| ||| Sbjct 19037274 GACACGATCGATAACGTGAAGGCAAAGATCCAAGACAAGGAAGGGATATCACCAGACCAA 19037333 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || || |||||||||||| | | ||| | ||||||| || Sbjct 19037334 CAGAGACTCATCTTTGCAGGCAAACAGCTCGAAGATGGCCGCACTCTTGCAGATTACAAC 19037393 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || |||||| | || || ||| | ||| | ||| Sbjct 19037394 ATCCAGAAAGAGTCAACCCTCCATCTTGTGCTGAGA 19037429 >seq2 Length=14066726 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||| || || ||||| | || || || ||| Sbjct 7053833 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTCT 7053774 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || || ||||| || ||||| || || Sbjct 7053773 GACACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCAG 7053714 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||||||| ||||| || ||| | || || | ||||| ||| Sbjct 7053713 CAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTACAAT 7053654 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| || || | || || || || || | || |||||||| ||| Sbjct 7053653 ATACAGAAGGAATCAACTCTCCACTTGGTTCTCAGGTTAAGAGGTGGT 7053606 Score = 86.0 bits (94), Expect = 9e-12 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||||||||| || || |||||||| || || || || || Sbjct 7052921 ATGCAAATCTTTGTGAAAACATTGACAGGTAAGACTATTACCTTGGAGGTTGAGAGCTCA 7052862 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || ||||| || || || ||||| || Sbjct 7052861 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAAGAGGGGATCCCACCAGACCAG 7052802 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || || ||||| || ||| | ||||| | ||||||| Sbjct 7052801 CAGAGACTCATCTTTGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCTGATTATA-- 7052744 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 7052743 ACATCCAAA 7052735 >seq7 Length=17303919 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| | || || ||||| ||||| ||||||| || ||| Sbjct 14231875 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTACTCTAGAAGTTGAGAGCTCT 14231816 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || ||||| || ||||| || ||||| || ||| Sbjct 14231815 GACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCAA 14231756 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| || | || | ||| || ||||| ||||| ||| Sbjct 14231755 CAACGACTTATCTTTGCGGGCAAGCAACTCGAGGAT 14231720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731864928286800