Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 118 2e-21 seq6 109 1e-18 seq2 95.1 2e-14 seq7 86.0 1e-11 >seq1 Length=19566579 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| ||||| | ||| | || | || | ||||| || || |||||| Sbjct 19037215 ATCCCACCTCTCAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCT 19037156 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | || || || ||||| || | |||||||||||| ||| Sbjct 19037155 GAAAGCGTTCGACCATCTTCGAGCTGCTTGCCTGCAAATATGAGTCTCTGTTGGTCTGGT 19037096 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 | || ||||| || ||||| || ||| ||| ||||| || || ||||| || Sbjct 19037095 TGGATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATGGTGTCTGAACTCTCG 19037036 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| |||||||||||||| || | || || | |||||||||||| Sbjct 19037035 ACTTCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 19036986 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| || || | || ||||| | || | |||||| || || || || | Sbjct 8289973 ACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGC 8289914 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || |||| |||| ||||| || || || || | | ||| ||||| ||||| Sbjct 8289913 GAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGG 8289854 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || ||| ||||| || || ||||| || ||||| Sbjct 8289853 GATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTAC 8289794 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || || || || ||||| ||||| | || ||||||||||| Sbjct 8289793 CTCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 8289743 >seq6 Length=16577294 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | || | |||||| || || ||||| Sbjct 6990423 ATACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCA 6990482 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | || ||||| ||||| || | ||||| || || ||| Sbjct 6990483 GCCAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGT 6990542 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||||||||| || ||| ||| ||||| || |||||||| || Sbjct 6990543 GGGATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTCTCA 6990602 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || ||||||||||| | || || | || |||||||| Sbjct 6990603 ACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATCTGCAT 6990652 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || ||||||||||| ||||| || | |||||| || || ||||| ||||| |||||| Sbjct 8339359 TCCTCTAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGGATTCCCTCTTTA 8339300 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || ||| || ||||| ||||| ||||| || || || || || ||| Sbjct 8339299 TCCTGGATCTTAGCCTTAACATTGTCAATAGTGTCTGAACTCTCAACCTCAAGGGTGATG 8339240 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || || | || |||||||| Sbjct 8339239 GTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 8339205 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | || | |||||| || || |||||| Sbjct 8339206 ATACCACCTCTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCT 8339147 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | ||||||||||| || || ||||| || || || || Sbjct 8339146 GCCAAGGTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGA 8339087 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || ||||| || || || || || Sbjct 8339086 GGAATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCA 8339027 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||| | |||||| | ||| || ||||| Sbjct 8339026 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || || || | || | ||| || || || ||||| Sbjct 735562 ATACCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCA 735621 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | ||||||||||| || ||||||||||| || || || Sbjct 735622 GCCAAGGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGA 735681 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || ||||| || || ||||| || Sbjct 735682 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTCTCG 735741 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||||| |||||| | || || ||||| Sbjct 735742 ACCTCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | ||| | || | || | ||| || ||||| || || Sbjct 6990651 ATACCACCACGAAGACGAAGTACAAGGTGAAGGGTCGACTCCTTTTGGATATTGTAGTCA 6990710 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | |||| || | || || || || || || | ||||| ||||| ||| Sbjct 6990711 GCAAGAGTCCTTCCGTCTTCAAGCTGCTTGCCCGCGAATATAAGCCTCTGCTGGTCCGGT 6990770 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||||||||| || || ||| ||||| || || ||||| || Sbjct 6990771 GGGATTCCCTCTTTATCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTCTCA 6990830 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || |||||||| ||||| || || || | || |||||||| Sbjct 6990831 ACCTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6990880 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || ||||| | || | |||||| || || ||||| Sbjct 6990879 ATACCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCG 6990938 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | |||||||| || || || ||||| || ||||| || Sbjct 6990939 GCCAAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGA 6990998 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || ||||| || || || || || Sbjct 6990999 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCG 6991058 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| |||||||| | |||||| | ||| || ||||| Sbjct 6991059 ACCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 >seq2 Length=14066726 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | ||| | ||| | ||||| ||| || || || ||||| Sbjct 7053148 ATACCACCTCTGAGACGAAGTACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCA 7053207 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| |||||||| || | |||||||||||| ||| Sbjct 7053208 GCAAGGGTGCGACCATCTTCAAGCTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGT 7053267 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || ||| || || ||| || || ||||| || Sbjct 7053268 GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCA 7053327 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || || || | || || | || |||||||| Sbjct 7053328 ACCTCCAAAGTTATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 7053377 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || | ||| | ||||| ||| || || || ||||| Sbjct 7053376 ATACCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCA 7053435 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || || || ||||||||||| || | ||||| || || || Sbjct 7053436 GCAAGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGA 7053495 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| ||||| |||||||| || || Sbjct 7053496 GGAATCCCTTCCTTGTCCTGAATCTTAGCTTTAACATTGTCAATAGTATCAGAGCTCTCA 7053555 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||||||| || || || || || | || |||||||| Sbjct 7053556 ACCTCCAAAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | | | || || || | ||| | || || ||||| ||||| Sbjct 7053604 ATACCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGATTCCTTCTGTATATTGTAATCC 7053663 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| | || || | |||||||| ||||| || ||||| || || || || Sbjct 7053664 GCCAAGGTACGTCCATCCTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGA 7053723 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || ||||| ||||| || || ||| Sbjct 7053724 GGGATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTGTCAGAGCTCTCT 7053783 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || ||||| | |||||| | ||| || ||||| Sbjct 7053784 ACCTCAAGAGTAATGGTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 7053833 >seq7 Length=17303919 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || ||||| | ||| | ||| || || || ||||| Sbjct 14231646 ATGCCACCACGAAGACGAAGAACCAAATGCAGAGTTGACTCCTTCTGGATGTTGTAATCC 14231705 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||| || || ||||| || | || |||||||| || Sbjct 14231706 GCAAGTGTCCGACCATCCTCGAGTTGCTTGCCCGCAAAGATAAGTCGTTGTTGGTCCGGA 14231765 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || ||| ||||| || || || || || Sbjct 14231766 GGGATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTCTCA 14231825 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||||||||||||||| || || | ||||| | ||||| ||||| Sbjct 14231826 ACTTCTAGAGTAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14231875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905127254123400