Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq6 354 9e-93 >seq6 Length=16577294 Score = 354 bits (392), Expect = 9e-93 Identities = 506/707 (72%), Gaps = 4/707 (1%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || ||||| |||||||| || |||||||| ||| | || ||| Sbjct 1968794 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCT-CTT 1968736 Query 159366 CCCAC-TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTG 159424 ||| ||| ||| | || | || |||||| | || || ||| | ||||| || || Sbjct 1968735 CCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATG 1968676 Query 159425 GTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGT 159484 ||| || || || | |||||||||||| | || ||| || ||| | || || || || Sbjct 1968675 GTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGT 1968616 Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544 || || |||||| | | | | |||||| | | |||| ||||||||||| | || Sbjct 1968615 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACA 1968556 Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 || |||| || ||||| ||| | || || | ||| |||||| || |||||||| Sbjct 1968555 AGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCACGG 1968496 Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTA 159663 || ||||| |||| ||||| ||| | |||||||||||||| || || ||| | | Sbjct 1968495 CGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGATCTGTTCAAT- 1968437 Query 159664 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 159723 | || ||||| ||||| || || ||||||||||| |||||||||||||| ||||||| Sbjct 1968436 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCC 1968377 Query 159724 TCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 159783 | || || ||| | ||||| || ||||||| || || || ||||| || || || | Sbjct 1968376 TAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTA 1968317 Query 159784 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATA 159843 | ||| ||||| | | || | ||||| ||||| || ||||| || || || || |||| Sbjct 1968316 TATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 1968257 Query 159844 TGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTG 159903 |||||||||| |||||| |||| || | || || || | || || ||||| | ||||| Sbjct 1968256 TGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTG 1968197 Query 159904 TAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAA 159963 |||| || || | | ||||||||| || |||||||| || || ||| | ||| Sbjct 1968196 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 1968137 Query 159964 CTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGG 160010 |||||| || || ||||| || |||||||| || |||||||| ||| Sbjct 1968136 CTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548369101332360