Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 149 8e-30 >seq5 Length=13709650 Score = 149 bits (164), Expect = 8e-30 Identities = 215/299 (72%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || || ||||| || ||||||||||| ||||| || || | | |||| | |||||| Sbjct 2138487 GAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGG 2138546 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||||| || || ||||| ||||| |||||| || ||||| Sbjct 2138547 ACATCGGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCAGCGAAG 2138606 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 ||||| |||||||| ||||| ||||| || ||| ||||| |||| | |||| | | Sbjct 2138607 AAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCCAATCG 2138666 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| ||| || || || || |||||||||| || || ||||| || ||| Sbjct 2138667 CGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTCTTG 2138726 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 ||||||||||| | || ||||| |||| ||||| | ||| || | || |||||||| Sbjct 2138727 TACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA-TACAGAATCTGTCTGGGGTTG 2138784 Score = 105 bits (116), Expect = 8e-17 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| ||| ||||| |||||| || | | || |||||||| || || ||| Sbjct 2138208 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 2138267 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||||| |||||| || || ||||| ||||| || || || || || Sbjct 2138268 TTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 2138327 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || || || |||||||| | ||| || || |||||| ||||||||||| Sbjct 2138328 GCAACGATTCGTTCAGCAAAGGTCT-GAGATCC-----GTCGATCCATTTCATCGCCCAC 2138381 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 | || || ||| || | || | ||| || || ||||| ||||| ||||| Sbjct 2138382 TGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGGAAGAGATGGTC 2138434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107075764000041