Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6 143 2e-29 seq1 131 2e-25 seq7 127 2e-24 seq2 127 2e-24 seq5 111 1e-19 seq4 104 2e-17 >seq6 Length=16577294 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| |||| || || ||||| || ||||| || ||||| || ||| | | Sbjct 2563749 GATGCAGATCTTTGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTGGAAAGCTC 2563690 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| | || |||| ||| | || |||||| ||||| ||||| || ||||| |||| Sbjct 2563689 TGACACAATCGACAACGTTAAGGCCAA-GATCCAGGACAAGGAAGGTATCCCTCCGGATC 2563631 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | ||| | | ||||||||||| || ||||| || ||| | | | || | || || | Sbjct 2563630 AGCAAAGGCTTATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGACTACA 2563571 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||| |||||||| || || |||||||| Sbjct 2563570 ACATTCAGAAGGAATCCACCCTCCACTTGGT 2563540 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||| || || ||||| || ||||| || ||||| || ||| | | Sbjct 14989928 GATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTC 14989987 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| | || |||| ||| | |||||||| ||||| || || || || || |||| Sbjct 14989988 TGACACAATCGACAACGTTAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCCCCGGATC 14990046 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | | ||||| ||||| || ||| |||||||| | | | || | || || | Sbjct 14990047 AGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACCTTGGCTGACTACA 14990106 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| || |||||||| || || |||||||| Sbjct 14990107 ACATCCAGAAGGAATCCACCCTCCACTTGGT 14990137 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || ||||| || || || || | ||||| ||| | | Sbjct 14990613 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACAATCACCTTGGAAGTTGAAAGCTCG 14990672 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||||||| || || || || || || Sbjct 14990673 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAG 14990732 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| || ||| |||||||| | | | || | || || ||| Sbjct 14990733 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCTTGGCCGACTACAAC 14990792 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || |||||||| ||||| Sbjct 14990793 ATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGCG 14990827 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||| | ||||| || ||||| || | || || || | Sbjct 14990385 ATGCAAATCTTTGTCAAGACGTTGACCGGGAAGACTATCACCTTGGAGGTGGAGAGTTCT 14990444 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||||||| || || || || || || Sbjct 14990445 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAG 14990504 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || ||| ||||||| |||| | || | || || ||| Sbjct 14990505 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCAGAACCTTGGCTGACTACAAC 14990564 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || |||||||| ||||| |||| ||||| Sbjct 14990565 ATCCAAAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTGCGTGGAGG 14990611 Score = 109 bits (120), Expect = 5e-19 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | ||||| || || || || || || || || | || Sbjct 2562836 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACCATCACCCTTGAGGTTGAGAGCTCC 2562777 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || ||||| || || Sbjct 2562776 GACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCAG 2562717 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| | ||||| || || || ||||| ||||| ||| | || || |||| || | Sbjct 2562716 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGC-ACAC-TGGCAGACTACA 2562659 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||| ||||||||||| || |||||||| Sbjct 2562658 ACATTCAGAAGGAATCGACCCTTCACTTGGT 2562628 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || |||||||| || || || || || || | | Sbjct 6990652 ATGCAGATCTTTGTGAAGACTCTCACTGGTAAAACAATCACCCTAGAGGTTGAGAGCTCA 6990593 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||||||||| ||||| ||||| || || ||||| Sbjct 6990592 GATACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGATCAG 6990533 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| || ||||| |||||| | | | || | ||||| ||| Sbjct 6990532 CAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGTCGCACCTTGGCTGATTACAAC 6990473 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || || || |||||| Sbjct 6990472 ATCCAGAAAGAGTCCACCCTCCATTTGGTG 6990443 Score = 109 bits (120), Expect = 5e-19 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| |||||||| || || ||||| ||||| || || | Sbjct 14990157 ATGCAGATTTTCGTCAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTGGAGAGTTCT 14990216 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| |||| | || |||||||||||| || || || ||||| || || Sbjct 14990217 GACACCATCGACAACGTTAAAGCCAA-GATCCAAGACAAGGAGGGTATCCCTCCGGACCA 14990275 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| ||||| || || || ||||| |||| | | | ||||| || Sbjct 14990276 GCAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTTGCCGATTACAA 14990335 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| || ||||| || || || || |||| Sbjct 14990336 CATCCAGAAGGAGTCCACCCTTCATCTTG 14990364 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || | | Sbjct 735563 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTTGAGAGCTCT 735504 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || ||||| || ||| Sbjct 735503 GACACTATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAA 735444 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| || ||||| |||||| | | | | || || ||| Sbjct 735443 CAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGCCGTACACTAGCTGACTACAAC 735384 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || || || |||||| Sbjct 735383 ATCCAGAAAGAGTCCACCCTTCATTTGGTG 735354 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || ||||| || | || || || | Sbjct 14990841 ATGCAGATCTTTGTCAAGACCTTGACCGGGAAGACTATCACCTTGGAGGTGGAGAGTTCT 14990900 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || ||||| || || Sbjct 14990901 GACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCAGACCAG 14990960 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || |||||||| |||||| | | | || | || || ||| Sbjct 14990961 CAGCGTCTCATCTTCGCTGGAAAACAGCTTGAGGATGGTCGCACCTTGGCTGACTACAAC 14991020 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||||||||| Sbjct 14991021 ATCCAGAAGGAGTCGACCCTTCACTTGGTG 14991050 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || || ||||| || | || Sbjct 14991069 ATGCAGATCTTTGTCAAGACCTTGACCGGGAAGACCATCACACTGGAAGTGGAGAGCTCC 14991128 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 14991129 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAG 14991188 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || |||||||| |||||| | | || | || || ||| Sbjct 14991189 CAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTACAAC 14991248 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 14991249 ATCCAAAAGGAGTCTACCCTTCA 14991271 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || |||||||| || ||||| || | || || || | | Sbjct 6990424 ATGCAGATTTTTGTAAAGACCCTAACCGGCAAGACTATCACTTTGGAGGTTGAGAGCTCA 6990365 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||| |||||||| ||||| || || || || || Sbjct 6990364 GACACAATCGATAACGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAG 6990305 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||||||||||||||| || || | | | | | ||||| ||| Sbjct 6990304 CAGAGACTCATCTTTGCCGGGAAACAGCTTGAAGACGGACGTACCCTCGCTGATTACAAC 6990245 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || ||||| || || || || || Sbjct 6990244 ATCCAAAAAGAGTCTACCCTGCA 6990222 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || ||||| || || || || | || || || | | Sbjct 6990196 ATGCAAATTTTTGTGAAGACCCTTACCGGCAAGACCATCACTTTGGAGGTTGAGAGCTCA 6990137 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| |||| | || ||| || ||||| ||||| || || || || || Sbjct 6990136 GACACTATTGATAACGTTAAAGCCAA-GATTCAGGACAAGGAAGGGATCCCACCAGACCA 6990078 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 || | | ||||| || ||||||||||| |||||| ||| || | || ||||||| Sbjct 6990077 GCAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCG-GACTCTTG-CAGATTAC 6990020 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| || || || |||||||| Sbjct 6990019 AACATCCAGAAGGAGTCTACTCTTCACTTGGT 6989988 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || ||||| || || || || || || | Sbjct 8339205 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACCATCACCCTTGAGGTTGAGAGTTCA 8339264 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || ||||| ||||| || || ||||| Sbjct 8339265 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 8339324 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | | ||||||||||| ||||| | |||||| ||| | || || | ||||| | Sbjct 8339325 CAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCG-CACACTTG-CGGATTACA 8339382 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 | || || |||||||| || || |||||||| Sbjct 8339383 ATATCCAGAAGGAATCAACCCTTCACTTGGT 8339413 >seq1 Length=19566579 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| |||| || || || || || || || ||||| | | Sbjct 8289746 ATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACAATAACCCTAGAGGTAGAGTCATCA 8289805 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| ||||| || || || || || Sbjct 8289806 GACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGGACCAG 8289865 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||||||||||||||| || ||||| | | || || ||| Sbjct 8289866 CAGCGTCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTACAAC 8289925 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || ||||| || || |||||| | || || | ||||| Sbjct 8289926 ATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGG 8289972 Score = 118 bits (130), Expect = 1e-21 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || ||||| || || || || | ||||| || | | Sbjct 19037669 GATGCAGATTTTTGTAAAGACCCTTACCGGAAAGACAATAACTTTGGAAGTTGAGAGCTC 19037728 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | ||||| ||||||||||||||| ||||| || | || || || Sbjct 19037729 GGACACAATTGACAATGTAAAGGCAAAGATCCAAGACAAGGAAGGGATCGCACCAGACCA 19037788 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 |||| | | ||||| || || |||||||| |||||| ||| | | || ||||||| Sbjct 19037789 ACAAAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCG-CACTCTTG-CAGATTAC 19037846 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| |||||||| || || || ||| | ||| |||| Sbjct 19037847 AACATCCAAAAGGAGTCAACCCTTCACCTTGTGCTGCG 19037884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| ||||| || || | ||||| || | | Sbjct 19037213 GATGCAGATCTTCGTCAAGACCCTTACCGGCAAAACCATAACTTTGGAAGTTGAGAGCTC 19037272 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||||||| ||||| ||| | || || || Sbjct 19037273 TGACACGATCGATAACGTGAAGGCAAAGATCCAAGACAAGGAAGGGATATCACCAGACCA 19037332 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | |||||||| || |||||||| || ||| | | | ||||||| || Sbjct 19037333 ACAGAGACTCATCTTTGCAGGCAAACAGCTCGAAGATGGCCGCACTCTTGCAGATTACAA 19037392 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || || | ||| || || | || || || Sbjct 19037393 CATCCAGAAAGAGTCAACCCTCCATCTTGTGCTGAGACTCCGTGGTGG 19037440 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||||||||| ||||| || ||||| || | Sbjct 19036986 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 19037045 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| |||||||| ||||| || | || || ||| Sbjct 19037046 GACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCAACCAGACCAA 19037105 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || || ||||| || ||| ||| | |||||||| ||| Sbjct 19037106 CAGAGACTCATATTTGCAGGCAAGCAGCTCGAAGATGGTCGAACGCTTTCAGATTACAAC 19037165 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || ||| | || | ||| || | || || Sbjct 19037166 ATCCAGAAAGAATCAACCCTTCACCTTGTACTTCGACTGAGAGGTGG 19037212 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || || ||||| || | ||||| || | | Sbjct 19037441 GATGCAGATTTTTGTAAAGACCCTTACTGGAAAGACTATAACTTTGGAAGTTGAGAGCTC 19037500 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| ||||| || | || || || Sbjct 19037501 TGACACAATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATTGCACCAGACCA 19037560 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 |||| | | || ||||| || |||||||| |||||| ||| | | || | ||||| Sbjct 19037561 ACAAAGACTCATTTTTGCTGGAAAACAGCTTGAGGATGGTCG-CACTCTTG-CTGATTAC 19037618 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || || || | ||| || || | || || || Sbjct 19037619 AACATCCAGAAAGAGTCAACTCTTCATCTCGTGCTGAGACTACGTGGTGG 19037668 >seq7 Length=17303919 Score = 127 bits (140), Expect = 2e-24 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || ||||| ||||| ||||| || ||||| || | | Sbjct 14231875 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTACTCTAGAAGTTGAGAGCTCT 14231816 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| ||||| || ||||| || ||| Sbjct 14231815 GACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCAA 14231756 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 ||||| | |||||||| || || || || |||||| ||| || || || | ||||| | Sbjct 14231755 CAACGACTTATCTTTGCGGGCAAGCAACTCGAGGATGGTCG-GACACTTG-CGGATTACA 14231698 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| || ||||| || || || || ||||| Sbjct 14231697 ACATCCAGAAGGAGTCAACTCTGCATTTGGT 14231667 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || ||||| || || || || | || ||||| ||| | || Sbjct 14232331 ATGCAAATCTTTGTTAAGACTCTAACTGGCAAGACCATAATTCTTGAAGTTGAAAGCTCC 14232272 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| | | || || Sbjct 14232271 GACACCATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCTACTGGACCAG 14232212 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||| ||| ||||| || || |||||| | | || | ||||| || Sbjct 14232211 CAGAGACTTATCTATGCGGGGAAGCAACTTGAGGATGGCCGTACTTTGGCGGATTACAAT 14232152 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || ||||||||||| | | ||| | |||||| Sbjct 14232151 ATTCAGAAGGAGTCAACTCTACACTTGGTTCTTAGGTTGAGAGGAGGC 14232104 Score = 100 bits (110), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || ||||| || || || || || || || ||| | | Sbjct 14232787 ATGCAGATCTTTGTTAAGACTCTTACCGGGAAGACCATAACTCTTGAGGTTGAAAGCTCT 14232728 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| || ||||| || |||| || || Sbjct 14232727 GACACGATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTACTCCGGACCAG 14232668 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 || | | |||||||| || || || || || ||| ||| |||| | | || || Sbjct 14232667 CAGAGGCTTATCTTTGCAGGCAAGCAACTTGAAGATGGTCGT---ACATTGGCTGACTAC 14232611 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || || ||||||||||| Sbjct 14232610 AATATTCAAAAGGAGTCAACTCTACACTTGGT 14232579 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || ||||| ||||| |||| || ||||| || | | Sbjct 14232559 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTATTCTAGAAGTTGAGAGCTCT 14232500 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| | |||||| | || || || Sbjct 14232499 GACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGTAGGAATCCTACCGGACCAG 14232440 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||| ||| || || || || |||||| ||| | | | ||||| || Sbjct 14232439 CAAAGACTTATCCATGCGGGCAAGCAACTCGAGGATGGTCGAACCCTTGCTGATTACAAT 14232380 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||| || ||||| |||||||| Sbjct 14232379 ATTCAGAAGGAGTCAACACTTCACTTGGT 14232351 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| ||||| || || || || || ||| | | Sbjct 14231647 ATGCAAATATTCGTCAAGACCCTTACCGGAAAAACCATAACACTGGAGGTTGAAAGCTCA 14231588 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || || |||||||||||||| ||||| || | || || || Sbjct 14231587 GACACAATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCTACCAGACCAG 14231528 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || || || || || |||||| ||| | | | ||||| ||| Sbjct 14231527 CAGAGACTTATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACCCTAGCGGATTACAAC 14231468 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || ||||| ||| | ||| |||| Sbjct 14231467 ATCCAGAAGGAGTCAACACTTCACCTAGTGCTGCG 14231433 >seq2 Length=14066726 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | ||||| || || || || || ||||| || || ||||| | | Sbjct 7053834 GATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTC 7053775 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||| || ||||| ||||| || ||||| ||||| Sbjct 7053774 TGACACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCA 7053715 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||||||| |||||||| |||||| | | | || | ||||| || Sbjct 7053714 GCAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTACAA 7053655 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| || || |||||||| Sbjct 7053654 TATACAGAAGGAATCAACTCTCCACTTGGT 7053625 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | || ||||| |||||||| | || || || | | Sbjct 7052921 ATGCAAATCTTTGTGAAAACATTGACAGGTAAGACTATTACCTTGGAGGTTGAGAGCTCA 7052862 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| || |||||||| || || || || || || Sbjct 7052861 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAAGAGGGGATCCCACCAGACCAG 7052802 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| ||||||||||| |||||| | | || | ||||||||| Sbjct 7052801 CAGAGACTCATCTTTGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCTGATTATAAC 7052742 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 || ||||||||||| || || |||||||| | || | || || || |||| Sbjct 7052741 ATCCAAAAGGAATCAACTCTCCACTTGGTTCTTCGTCTTCGTGGTGGTGGAA 7052690 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| || || || || | || || || | | Sbjct 7053377 ATGCAGATTTTTGTGAAGACCCTTACCGGAAAGACCATAACTTTGGAGGTTGAGAGCTCA 7053318 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| || ||||| |||||||| || || || ||| Sbjct 7053317 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAA 7053258 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| ||||||||||| || ||| | | | | | ||||| ||| Sbjct 7053257 CAGAGACTCATCTTTGCTGGGAAACAGCTTGAAGATGGTCGCACCCTTGCTGATTACAAC 7053198 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || |||||||| || || || || |||| Sbjct 7053197 ATCCAAAAGGAGTCTACTCTCCATCTTG 7053170 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | || || ||||| ||||| | || || || | | Sbjct 7053605 ATGCAGATCTTTGTGAAGACGTTGACAGGAAAAACCATTACTTTGGAGGTTGAGAGCTCT 7053546 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 7053545 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 7053486 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | | |||||||| || || ||| | |||||| ||| | || || | ||||| | Sbjct 7053485 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCG-CACACTTG-CTGATTACA 7053428 Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTG 24910 |||| |||||||| || || || || |||| Sbjct 7053427 ACATCCAAAAGGAGTCTACTCTCCATCTTG 7053398 >seq5 Length=13709650 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| ||||| || || || || || || || || || | | Sbjct 13270371 GATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTGGAGTCGTC 13270430 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||||||||| ||||| || || || || || Sbjct 13270431 AGACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGGACCA 13270490 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||| || |||||||| |||||||| || | | || | || || || Sbjct 13270491 GCAGCGGTTGATATTCGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGGCCGACTACAA 13270550 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||||||||| || || ||||| Sbjct 13270551 CATCCAGAAGGAATCGACGCTTCATCTGGTG 13270581 Score = 109 bits (120), Expect = 5e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | |||| || || || || || | || || | || ||| | || Sbjct 4166253 ATGCAGATCTTTGTCAAAAGTCTTACAGGCAAGACCGTAACTCTTAAGGTCGAAAGCTCC 4166194 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | | || | ||| |||||||||||||| ||||||||||| |||| || || Sbjct 4166193 GACATGATCCACAAAGTTAAGGCAAAAGATCCAAGATAAAGAAGGAATCCCTCTTGACCA 4166134 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| ||||||||||||| |||||||| |||||| | | | || | ||||| | Sbjct 4166133 GCAACAAATGATCTTTGCCGGTAAACAGCTCGAGGATGGTCGTACCTTGGCTGATTACAG 4166074 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||||| Sbjct 4166073 CATTCCGAAAGAGTCAACTCTCCATTTGGT 4166044 >seq4 Length=14994381 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| ||||| || || || || || ||||| ||||| | | Sbjct 14616597 GATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTAGAGTCATC 14616656 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| |||||||| || || || || Sbjct 14616657 TGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCGGACCA 14616716 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||| || ||||| || ||||| ||||| ||| | | | || || || Sbjct 14616717 GCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACCTTAGCCGACTACAA 14616776 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 14616777 CATCCAGAAGGAGTCAACGCTTCAC 14616801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893252864440