Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq2 100 2e-16 seq6 89.7 4e-13 seq1 86.0 5e-12 >seq7 Length=17303919 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||||||||| |||||| | ||||||||||||||||| | ||| ||| || Sbjct 14231875 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTACTCTAGAAGTTGAGAGCTCT 14231816 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || ||| ||||| ||||| ||||| | || ||| Sbjct 14231815 GAC---ACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGAC 14231759 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| ||||||| | |||||| || || || ||||||| | ||| | ||||||||| Sbjct 14231758 CAACAACGACTTATCTTTGCGGGCAAGCAACTCGAGGATGGTCGGACACTTGCGGATTAC 14231699 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || || || || || |||| |||| Sbjct 14231698 AACATCCAGAAGGAGTCAACTCTGCATTTGGT 14231667 >seq2 Length=14066726 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA--ACGGAGC-CT 110329 |||||||| || || ||||| | || ||||| |||||||| | || | |||| || Sbjct 7053833 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTCT 7053774 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| ||| | | || || |||||| ||||| ||||| | || |||| Sbjct 7053773 GAC---ACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGAT 7053717 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||| | || | ||| ||||||||||| ||||||| | || ||||||||||| Sbjct 7053716 CAGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTAC 7053657 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || || ||||| || | ||| |||| Sbjct 7053656 AATATACAGAAGGAATCAACTCTCCACTTGGT 7053625 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || || ||||||||||| | || ||| Sbjct 7053605 ATGCAGATCTTTGTGAAGACGTTGACAGGAAAAACCATTACTTTGGAGGTTGAGAGCTCT 7053546 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || ||| |||||| ||||| ||||| | || |||||| Sbjct 7053545 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 7053486 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||| ||| | ||||||| | ||| | || ||||||||| Sbjct 7053485 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAAC 7053426 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| || ||||| Sbjct 7053425 ATCCAAAAGGAGTCTAC 7053409 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 || || || ||||| || | ||| || |||||||| ||||||| | ||| | |||||| Sbjct 7053035 GACCAGCAGAGACTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGCACACTTGCGGAT 7052976 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||||| |||||||||||||| | ||| | ||||| Sbjct 7052975 TACAACATCCAAAAAGAATCTACTCTTCACCTTGTGTT 7052938 >seq6 Length=16577294 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||||| || ||||||||||| ||| | || ||| | Sbjct 8339205 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACCATCACCCTTGAGGTTGAGAGTTCA 8339264 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || ||||| || ||||| || | || |||||| Sbjct 8339265 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 8339324 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||| |||||||| | ||||||| | ||| | ||||||||||| Sbjct 8339325 CAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTTGCGGATTACAAT 8339384 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || ||||| || | ||| |||| Sbjct 8339385 ATCCAGAAGGAATCAACCCTTCACTTGGT 8339413 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| ||||| |||| ||||| ||||| || |||| ||| || | Sbjct 735791 ATGCAAATTTTTGTGAAAACACTAACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCA 735732 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || ||||| ||||| |||||| | || |||||| Sbjct 735731 -GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCA 735673 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||| | || | || ||||||||||| || |||| | | || |||| |||||||| Sbjct 735672 GCAGAGATTAATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACCTTGGCTGATTACAA 735613 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| || || || || || | ||| |||| Sbjct 735612 CATCCAGAAGGAGTCGACCCTCCACTTGGT 735583 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || ||||| || ||| | ||||| || || || ||| |||| ||| || || Sbjct 2563748 ATGCAGATCTTTGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTGGAAAGCTCT 2563689 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| ||||| | || |||| Sbjct 2563688 GAC---ACAATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGAT 2563632 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| ||||| | ||| || || ||||| || |||| | | || |||| || ||| Sbjct 2563631 CAGCAAAGGCTTATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGACTAC 2563572 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || ||||| || | ||| |||| | || || || || || Sbjct 2563571 AACATTCAGAAGGAATCCACCCTCCACTTGGTCCTCAGGCTTCGTGGTGG 2563522 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| || || ||||| | || ||||| ||||| || |||| ||| || Sbjct 8338977 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 8339036 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || |||||| ||||| |||||| | || |||| Sbjct 8339037 GAC---ACCATTGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGAT 8339093 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||| | || | || ||||||||||| || |||| | | || |||| |||||| Sbjct 8339094 CAGCAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACCTTGGCAGATTAC 8339153 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || ||||| || || Sbjct 8339154 AACATCCAGAAAGAGTCAAC 8339173 >seq1 Length=19566579 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || ||||| ||||| ||||| || || || || ||| | || ||| | Sbjct 8289743 AAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACAATAACCCTAGAGGTAGAGTCA 8289802 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || ||| |||||| ||||| ||||| | || ||| Sbjct 8289803 TCAGACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGGAC 8289862 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || ||||||||||| || | |||||| | || || ||| Sbjct 8289863 CAGCAGCGTCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTAC 8289922 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| || ||| | || ||||| | | ||| |||| || Sbjct 8289923 AACATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGG 8289972 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| ||||| || | ||||| |||||||||||| | ||| ||| | Sbjct 19036986 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 19037045 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| |||||| ||||| ||||| | | || ||| Sbjct 19037046 GACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCAACCAGACCAA 19037105 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || ||||| || |||| |||| | | ||||||||| Sbjct 19037106 CAGAGACTCATATTTGCAGGCAAGCAGCTCGAAGATGGTCGAACGCTTTCAGATTACAAC 19037165 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || |||||||| || | ||| | || | ||||| |||| || Sbjct 19037166 ATCCAGAAAGAATCAACCCTTCACCTTGTACTTCGACTGAGAGGTGG 19037212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412837710645089